miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24528 3' -55.2 NC_005264.1 + 3436 0.67 0.895571
Target:  5'- cGCGCCCgCGCugCUC--GCAAAGCGc -3'
miRNA:   3'- -UGCGGGgGUGugGGGcuUGUUUUGUu -5'
24528 3' -55.2 NC_005264.1 + 40056 0.67 0.902101
Target:  5'- -gGCCCgCAgCGCCCCGGcgGCAAGAgGc -3'
miRNA:   3'- ugCGGGgGU-GUGGGGCU--UGUUUUgUu -5'
24528 3' -55.2 NC_005264.1 + 11466 0.67 0.888804
Target:  5'- -aGCCCCgaaGCACCCCc--CGAAGCAc -3'
miRNA:   3'- ugCGGGGg--UGUGGGGcuuGUUUUGUu -5'
24528 3' -55.2 NC_005264.1 + 157743 0.67 0.879663
Target:  5'- uCGCCCCCAgGcguagaggaccccuCCCCGGACGGGcuggccgccuuGCGAc -3'
miRNA:   3'- uGCGGGGGUgU--------------GGGGCUUGUUU-----------UGUU- -5'
24528 3' -55.2 NC_005264.1 + 64347 0.67 0.881094
Target:  5'- gGCGCCUCCggcagauacuuuaGCACCCC--ACGGAGCu- -3'
miRNA:   3'- -UGCGGGGG-------------UGUGGGGcuUGUUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 159083 0.67 0.902101
Target:  5'- -gGCCCgCAgCGCCCCGGcgGCAAGAgGc -3'
miRNA:   3'- ugCGGGgGU-GUGGGGCU--UGUUUUgUu -5'
24528 3' -55.2 NC_005264.1 + 92212 0.67 0.874581
Target:  5'- gGCGUCCCCACGuuCCUccuggCGAGCgGGAACAAc -3'
miRNA:   3'- -UGCGGGGGUGU--GGG-----GCUUG-UUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 47119 0.67 0.867133
Target:  5'- cGCGCCCCCuacCAUgCCGGAUGAcuugguGGCGAu -3'
miRNA:   3'- -UGCGGGGGu--GUGgGGCUUGUU------UUGUU- -5'
24528 3' -55.2 NC_005264.1 + 76068 0.67 0.881806
Target:  5'- gACGCCgCgACGCCgCGAGCGucGACGg -3'
miRNA:   3'- -UGCGGgGgUGUGGgGCUUGUu-UUGUu -5'
24528 3' -55.2 NC_005264.1 + 45057 0.67 0.874581
Target:  5'- gAUGCCg-CGCAgUCCGAGCAGAACAAc -3'
miRNA:   3'- -UGCGGggGUGUgGGGCUUGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 111473 0.67 0.895571
Target:  5'- -aGUCCCCuuCACCUCGgGGCAAAGCu- -3'
miRNA:   3'- ugCGGGGGu-GUGGGGC-UUGUUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 38717 0.67 0.879663
Target:  5'- uCGCCCCCAgGcguagaggaccccuCCCCGGACGGGcuggccgccuuGCGAc -3'
miRNA:   3'- uGCGGGGGUgU--------------GGGGCUUGUUU-----------UGUU- -5'
24528 3' -55.2 NC_005264.1 + 149562 0.67 0.895571
Target:  5'- gACuCUCCCGCggacaGCCCCGGGCGGAGgGGg -3'
miRNA:   3'- -UGcGGGGGUG-----UGGGGCUUGUUUUgUU- -5'
24528 3' -55.2 NC_005264.1 + 128581 0.68 0.82677
Target:  5'- cGCGUCgCCCGCGCCUCGcuACAGAAg-- -3'
miRNA:   3'- -UGCGG-GGGUGUGGGGCu-UGUUUUguu -5'
24528 3' -55.2 NC_005264.1 + 157444 0.68 0.835236
Target:  5'- uACGCCCUgCugGCCCCuGGCA-AGCAAu -3'
miRNA:   3'- -UGCGGGG-GugUGGGGcUUGUuUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 82966 0.68 0.835236
Target:  5'- uCGCCgCCGCGCCCCcguGACGAAGg-- -3'
miRNA:   3'- uGCGGgGGUGUGGGGc--UUGUUUUguu -5'
24528 3' -55.2 NC_005264.1 + 154549 0.68 0.835236
Target:  5'- gUGCCCCCGuCGCCCaCGGGCGc----- -3'
miRNA:   3'- uGCGGGGGU-GUGGG-GCUUGUuuuguu -5'
24528 3' -55.2 NC_005264.1 + 58264 0.68 0.859468
Target:  5'- uACGCUucgagCCCGCuGCCuuGGACAGAGCu- -3'
miRNA:   3'- -UGCGG-----GGGUG-UGGggCUUGUUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 120984 0.68 0.859468
Target:  5'- uUGCCCCCcC-CCCCGAGCucccauauGCAc -3'
miRNA:   3'- uGCGGGGGuGuGGGGCUUGuuu-----UGUu -5'
24528 3' -55.2 NC_005264.1 + 140606 0.68 0.843513
Target:  5'- gGCGaCCgCCCAgACCgCCG-ACGAGGCGAc -3'
miRNA:   3'- -UGC-GG-GGGUgUGG-GGCuUGUUUUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.