Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24529 | 3' | -54.9 | NC_005264.1 | + | 128034 | 1.07 | 0.005489 |
Target: 5'- uACCACUCGACGCGCAUGACACGGAUGc -3' miRNA: 3'- -UGGUGAGCUGCGCGUACUGUGCCUAC- -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 9007 | 1.07 | 0.005489 |
Target: 5'- uACCACUCGACGCGCAUGACACGGAUGc -3' miRNA: 3'- -UGGUGAGCUGCGCGUACUGUGCCUAC- -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 134902 | 0.74 | 0.592568 |
Target: 5'- gACCAC-CGACGCGCA-GACACGc--- -3' miRNA: 3'- -UGGUGaGCUGCGCGUaCUGUGCcuac -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 90766 | 0.73 | 0.612985 |
Target: 5'- uGCCGC-CGugGCuguGCAUGACAgGGAUu -3' miRNA: 3'- -UGGUGaGCugCG---CGUACUGUgCCUAc -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 16426 | 0.72 | 0.674328 |
Target: 5'- gGCCGCUCGACuGcCGCggGGCcugcccGCGGGUGu -3' miRNA: 3'- -UGGUGAGCUG-C-GCGuaCUG------UGCCUAC- -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 83250 | 0.71 | 0.734413 |
Target: 5'- cGCCGCU-GAUGCGC-UGGCGCGGc-- -3' miRNA: 3'- -UGGUGAgCUGCGCGuACUGUGCCuac -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 19428 | 0.71 | 0.753828 |
Target: 5'- cGCCGggUGugGcCGCggGGCGCGGGUGg -3' miRNA: 3'- -UGGUgaGCugC-GCGuaCUGUGCCUAC- -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 57878 | 0.7 | 0.782122 |
Target: 5'- gGCgGCaCGGCgGC-CAUGGCGCGGAUGa -3' miRNA: 3'- -UGgUGaGCUG-CGcGUACUGUGCCUAC- -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 94394 | 0.7 | 0.782122 |
Target: 5'- gGCC-CUCcGCGCGCAgaccgcGGCGCGGAc- -3' miRNA: 3'- -UGGuGAGcUGCGCGUa-----CUGUGCCUac -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 41583 | 0.7 | 0.809204 |
Target: 5'- aACCGCUCGACGUGgCGUcuaaACAUGGGc- -3' miRNA: 3'- -UGGUGAGCUGCGC-GUAc---UGUGCCUac -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 147568 | 0.69 | 0.826469 |
Target: 5'- gGCCGC-CGACGUGUgcGACGgGGAa- -3' miRNA: 3'- -UGGUGaGCUGCGCGuaCUGUgCCUac -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 20456 | 0.69 | 0.83484 |
Target: 5'- aGCCgGCggacagCGGCGCGCAUGggaggGCAUGGAa- -3' miRNA: 3'- -UGG-UGa-----GCUGCGCGUAC-----UGUGCCUac -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 110914 | 0.69 | 0.843027 |
Target: 5'- cGCCaaGCUCGGCGCGgAcGAC-CGGAg- -3' miRNA: 3'- -UGG--UGAGCUGCGCgUaCUGuGCCUac -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 136653 | 0.69 | 0.843027 |
Target: 5'- aGCC--UCGACGCGCGUGGaguaaaacaAUGGGUGc -3' miRNA: 3'- -UGGugAGCUGCGCGUACUg--------UGCCUAC- -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 16671 | 0.68 | 0.866408 |
Target: 5'- gGCCACgCGACGUGCAUgcgaggcaucGACACGa--- -3' miRNA: 3'- -UGGUGaGCUGCGCGUA----------CUGUGCcuac -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 94593 | 0.68 | 0.866408 |
Target: 5'- gGCCGCccgCGGCGCggGCAUGGCuuGGcgGu -3' miRNA: 3'- -UGGUGa--GCUGCG--CGUACUGugCCuaC- -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 62046 | 0.68 | 0.878112 |
Target: 5'- uACCAUcguaagagauuugCGGCGCGCAUGGCuuGGGc- -3' miRNA: 3'- -UGGUGa------------GCUGCGCGUACUGugCCUac -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 58890 | 0.68 | 0.880951 |
Target: 5'- cGCCACgCGuuCGCGCAUa--GCGGAUGc -3' miRNA: 3'- -UGGUGaGCu-GCGCGUAcugUGCCUAC- -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 58806 | 0.68 | 0.880951 |
Target: 5'- aACCGauuuccgCGGCGCGCGUcaaACACGGAa- -3' miRNA: 3'- -UGGUga-----GCUGCGCGUAc--UGUGCCUac -5' |
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24529 | 3' | -54.9 | NC_005264.1 | + | 114300 | 0.68 | 0.887893 |
Target: 5'- gGCgACgggGGCGCGCGggacGACGCGGAa- -3' miRNA: 3'- -UGgUGag-CUGCGCGUa---CUGUGCCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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