miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24529 5' -55.7 NC_005264.1 + 114966 0.66 0.926456
Target:  5'- ---uCCCGC-AGCCUAGCGcgaacUUGAGGc -3'
miRNA:   3'- gaguGGGUGcUCGGAUCGC-----AACUCCu -5'
24529 5' -55.7 NC_005264.1 + 119862 0.66 0.924303
Target:  5'- --uGCCUcgACGAGCUUAGCGUcacugccaaccagGGGGAc -3'
miRNA:   3'- gagUGGG--UGCUCGGAUCGCAa------------CUCCU- -5'
24529 5' -55.7 NC_005264.1 + 154557 0.66 0.915308
Target:  5'- gUCGCCCACGGGCgccuugUUGGCGUuccUGAa-- -3'
miRNA:   3'- gAGUGGGUGCUCG------GAUCGCA---ACUccu -5'
24529 5' -55.7 NC_005264.1 + 35530 0.66 0.915308
Target:  5'- gUCGCCCACGGGCgccuugUUGGCGUuccUGAa-- -3'
miRNA:   3'- gAGUGGGUGCUCG------GAUCGCA---ACUccu -5'
24529 5' -55.7 NC_005264.1 + 122663 0.66 0.909377
Target:  5'- -aCACCUACuuuGGCCUGGCGacaGGGAa -3'
miRNA:   3'- gaGUGGGUGc--UCGGAUCGCaacUCCU- -5'
24529 5' -55.7 NC_005264.1 + 120043 0.66 0.90321
Target:  5'- --aGCUCAgGgGGUCUAGCGggGGGGAa -3'
miRNA:   3'- gagUGGGUgC-UCGGAUCGCaaCUCCU- -5'
24529 5' -55.7 NC_005264.1 + 43139 0.66 0.90321
Target:  5'- -aCACCuaagCACGGGUggAGCGggGAGGGg -3'
miRNA:   3'- gaGUGG----GUGCUCGgaUCGCaaCUCCU- -5'
24529 5' -55.7 NC_005264.1 + 144904 0.66 0.90321
Target:  5'- -aCugUCGCGAGCCUggucuuucuaAGCGUgauucuagGGGGGc -3'
miRNA:   3'- gaGugGGUGCUCGGA----------UCGCAa-------CUCCU- -5'
24529 5' -55.7 NC_005264.1 + 162166 0.66 0.90321
Target:  5'- -aCACCuaagCACGGGUggAGCGggGAGGGg -3'
miRNA:   3'- gaGUGG----GUGCUCGgaUCGCaaCUCCU- -5'
24529 5' -55.7 NC_005264.1 + 29220 0.67 0.883325
Target:  5'- gUCACCgAUgggGAGCC-AGCGgucGAGGAg -3'
miRNA:   3'- gAGUGGgUG---CUCGGaUCGCaa-CUCCU- -5'
24529 5' -55.7 NC_005264.1 + 152504 0.67 0.876247
Target:  5'- -aUAUCCACGAGCCaguGaCGUaGAGGGc -3'
miRNA:   3'- gaGUGGGUGCUCGGau-C-GCAaCUCCU- -5'
24529 5' -55.7 NC_005264.1 + 4736 0.68 0.861442
Target:  5'- --uGCCCGcCGAGCC-GGCGUccGGGGGu -3'
miRNA:   3'- gagUGGGU-GCUCGGaUCGCAa-CUCCU- -5'
24529 5' -55.7 NC_005264.1 + 123762 0.68 0.861442
Target:  5'- --uGCCCGcCGAGCC-GGCGUccGGGGGu -3'
miRNA:   3'- gagUGGGU-GCUCGGaUCGCAa-CUCCU- -5'
24529 5' -55.7 NC_005264.1 + 51779 0.68 0.853726
Target:  5'- aUCGCCCggcGCGAaCUUGGCGUUGAugucguagGGAa -3'
miRNA:   3'- gAGUGGG---UGCUcGGAUCGCAACU--------CCU- -5'
24529 5' -55.7 NC_005264.1 + 5872 0.68 0.837701
Target:  5'- -cCGCgCCGCGAGCgUGGUccaguaGUUGAGGu -3'
miRNA:   3'- gaGUG-GGUGCUCGgAUCG------CAACUCCu -5'
24529 5' -55.7 NC_005264.1 + 30407 0.69 0.79451
Target:  5'- -aCGCCgGCGAGCgUAGCGUUGu--- -3'
miRNA:   3'- gaGUGGgUGCUCGgAUCGCAACuccu -5'
24529 5' -55.7 NC_005264.1 + 4011 0.69 0.785399
Target:  5'- cCUCGCCCACcagGGGCUUGGCGggccgaUGcaucAGGAg -3'
miRNA:   3'- -GAGUGGGUG---CUCGGAUCGCa-----AC----UCCU- -5'
24529 5' -55.7 NC_005264.1 + 123038 0.69 0.785399
Target:  5'- cCUCGCCCACcagGGGCUUGGCGggccgaUGcaucAGGAg -3'
miRNA:   3'- -GAGUGGGUG---CUCGGAUCGCa-----AC----UCCU- -5'
24529 5' -55.7 NC_005264.1 + 149563 0.69 0.785399
Target:  5'- aCUCuCCCGCGgacAGCCccgGGCGgaGGGGGg -3'
miRNA:   3'- -GAGuGGGUGC---UCGGa--UCGCaaCUCCU- -5'
24529 5' -55.7 NC_005264.1 + 158236 0.7 0.736985
Target:  5'- -gCGCCUACGccgccgcGGCgCUGGCGggGAGGGc -3'
miRNA:   3'- gaGUGGGUGC-------UCG-GAUCGCaaCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.