miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24530 3' -60.2 NC_005264.1 + 67480 0.66 0.717222
Target:  5'- cCCgaggcCGGGcCGCCGCcccgccgaguccguuUCGCGGCGCc -3'
miRNA:   3'- aGGagaa-GCUC-GCGGCG---------------AGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 150858 0.66 0.713357
Target:  5'- -aCUCUgcc-GUGCCGCgCGCGGCAa -3'
miRNA:   3'- agGAGAagcuCGCGGCGaGCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 144787 0.66 0.713357
Target:  5'- cCCUggcUCGcGGCGCCGCcgcuUCGCgucGGCACg -3'
miRNA:   3'- aGGAga-AGC-UCGCGGCG----AGCG---CCGUG- -5'
24530 3' -60.2 NC_005264.1 + 31832 0.66 0.713357
Target:  5'- -aCUCUgcc-GUGCCGCgCGCGGCAa -3'
miRNA:   3'- agGAGAagcuCGCGGCGaGCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 100913 0.66 0.713357
Target:  5'- uUCCUCUUC--GCGCaaGCg-GCGGCGCc -3'
miRNA:   3'- -AGGAGAAGcuCGCGg-CGagCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 128985 0.66 0.713357
Target:  5'- cUCCacguUCUUC-AGCuCUGC-CGCGGCGCg -3'
miRNA:   3'- -AGG----AGAAGcUCGcGGCGaGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 35426 0.67 0.703652
Target:  5'- cUCCggcagCUUCaacGCGCCGCgUC-CGGCGCc -3'
miRNA:   3'- -AGGa----GAAGcu-CGCGGCG-AGcGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 154453 0.67 0.703652
Target:  5'- cUCCggcagCUUCaacGCGCCGCgUC-CGGCGCc -3'
miRNA:   3'- -AGGa----GAAGcu-CGCGGCG-AGcGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 15561 0.67 0.703652
Target:  5'- aUCCUCaaCGGcGUGCaGCUCGUGGC-Ca -3'
miRNA:   3'- -AGGAGaaGCU-CGCGgCGAGCGCCGuG- -5'
24530 3' -60.2 NC_005264.1 + 46898 0.67 0.703652
Target:  5'- aCCUCcuagcuGCGCCGCguguUCGCGGCu- -3'
miRNA:   3'- aGGAGaagcu-CGCGGCG----AGCGCCGug -5'
24530 3' -60.2 NC_005264.1 + 25085 0.67 0.693889
Target:  5'- cCCUUUUCG-GCGCCGgggacaaGCGGgGCa -3'
miRNA:   3'- aGGAGAAGCuCGCGGCgag----CGCCgUG- -5'
24530 3' -60.2 NC_005264.1 + 93235 0.67 0.693889
Target:  5'- gUUCUCacgcCGGGCGgCGCccUCGuCGGCGCg -3'
miRNA:   3'- -AGGAGaa--GCUCGCgGCG--AGC-GCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 101733 0.67 0.693889
Target:  5'- cCCUCaa-GAGCGUC-UUgGCGGCGCg -3'
miRNA:   3'- aGGAGaagCUCGCGGcGAgCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 133724 0.67 0.674226
Target:  5'- gCCUCUggcCGAcaGCC-CUUGCGGCGCu -3'
miRNA:   3'- aGGAGAa--GCUcgCGGcGAGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 135384 0.67 0.664342
Target:  5'- gUCCUUUgcu-GCGCCGCU--CGGCGCa -3'
miRNA:   3'- -AGGAGAagcuCGCGGCGAgcGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 143735 0.67 0.654434
Target:  5'- -gCUCgUCuccGCGCCGC-CGCGGUGCa -3'
miRNA:   3'- agGAGaAGcu-CGCGGCGaGCGCCGUG- -5'
24530 3' -60.2 NC_005264.1 + 116394 0.67 0.654434
Target:  5'- aCCUCUUCGucGGCuCuCGCUgagccCGCGGCAg -3'
miRNA:   3'- aGGAGAAGC--UCGcG-GCGA-----GCGCCGUg -5'
24530 3' -60.2 NC_005264.1 + 153332 0.67 0.654434
Target:  5'- cCCUCga-GGGCGCCGCgccugaCGCuGGCu- -3'
miRNA:   3'- aGGAGaagCUCGCGGCGa-----GCG-CCGug -5'
24530 3' -60.2 NC_005264.1 + 2939 0.67 0.654434
Target:  5'- cUCCagcgugCUUUGAGaaaCGCgGCUCGCcGGCAUa -3'
miRNA:   3'- -AGGa-----GAAGCUC---GCGgCGAGCG-CCGUG- -5'
24530 3' -60.2 NC_005264.1 + 86842 0.67 0.654434
Target:  5'- aUCUUCUaggGGGCGCCaGCUaGCGGCGu -3'
miRNA:   3'- -AGGAGAag-CUCGCGG-CGAgCGCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.