miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24533 3' -57.3 NC_005264.1 + 93059 0.66 0.883635
Target:  5'- aGGGCUgucugCUGcGGGAgGGGCCGCGGcGAc- -3'
miRNA:   3'- -CUUGA-----GAC-CCUUgCUCGGCGCC-CUcu -5'
24533 3' -57.3 NC_005264.1 + 30437 0.66 0.876657
Target:  5'- gGAGgUCUcGGGG--GAGCCGCGGGc-- -3'
miRNA:   3'- -CUUgAGA-CCCUugCUCGGCGCCCucu -5'
24533 3' -57.3 NC_005264.1 + 149464 0.66 0.876657
Target:  5'- gGAGgUCUcGGGG--GAGCCGCGGGc-- -3'
miRNA:   3'- -CUUgAGA-CCCUugCUCGGCGCCCucu -5'
24533 3' -57.3 NC_005264.1 + 882 0.66 0.874522
Target:  5'- cGGACguacgaCUGGGuGuacggccccgugucGCGGGCCGCuGGGGGGa -3'
miRNA:   3'- -CUUGa-----GACCC-U--------------UGCUCGGCG-CCCUCU- -5'
24533 3' -57.3 NC_005264.1 + 119908 0.66 0.874522
Target:  5'- cGGACguacgaCUGGGuGuacggccccgugucGCGGGCCGCuGGGGGGa -3'
miRNA:   3'- -CUUGa-----GACCC-U--------------UGCUCGGCG-CCCUCU- -5'
24533 3' -57.3 NC_005264.1 + 98393 0.66 0.869466
Target:  5'- aGGCUacaGGGAGuuaGAGCCGCGGcAGAc -3'
miRNA:   3'- cUUGAga-CCCUUg--CUCGGCGCCcUCU- -5'
24533 3' -57.3 NC_005264.1 + 41860 0.67 0.844297
Target:  5'- gGAGCUCggggggGGGGGCaacGGCCGCGcacagacucuugccGGAGGa -3'
miRNA:   3'- -CUUGAGa-----CCCUUGc--UCGGCGC--------------CCUCU- -5'
24533 3' -57.3 NC_005264.1 + 160886 0.67 0.844297
Target:  5'- gGAGCUCggggggGGGGGCaacGGCCGCGcacagacucuugccGGAGGa -3'
miRNA:   3'- -CUUGAGa-----CCCUUGc--UCGGCGC--------------CCUCU- -5'
24533 3' -57.3 NC_005264.1 + 19268 0.67 0.838688
Target:  5'- cGGGCcCcGGGGACggcaGAGUCGgGGGAGGg -3'
miRNA:   3'- -CUUGaGaCCCUUG----CUCGGCgCCCUCU- -5'
24533 3' -57.3 NC_005264.1 + 27921 0.67 0.838688
Target:  5'- cGAGCUcCUGGGGACGAGCaguucccaaCGGGc-- -3'
miRNA:   3'- -CUUGA-GACCCUUGCUCGgc-------GCCCucu -5'
24533 3' -57.3 NC_005264.1 + 112353 0.67 0.83052
Target:  5'- cAGCUUUGGGGAUuuuGCCGCGGuccuguccGAGGa -3'
miRNA:   3'- cUUGAGACCCUUGcu-CGGCGCC--------CUCU- -5'
24533 3' -57.3 NC_005264.1 + 119119 0.67 0.822176
Target:  5'- cGGGCUCUgcuggGGGAggGCGAGgaCGCauggGGGAGAa -3'
miRNA:   3'- -CUUGAGA-----CCCU--UGCUCg-GCG----CCCUCU- -5'
24533 3' -57.3 NC_005264.1 + 107613 0.67 0.822176
Target:  5'- uGACaugCUGcGccUGGGCCGCGGGAGAa -3'
miRNA:   3'- cUUGa--GACcCuuGCUCGGCGCCCUCU- -5'
24533 3' -57.3 NC_005264.1 + 118635 0.67 0.804992
Target:  5'- cAGCUCUGGGGAgGGG--GgGGGGGAa -3'
miRNA:   3'- cUUGAGACCCUUgCUCggCgCCCUCU- -5'
24533 3' -57.3 NC_005264.1 + 43263 0.67 0.804992
Target:  5'- -cGCUCgggcauagGGGAGgGAacGCCGCGGGucuGAu -3'
miRNA:   3'- cuUGAGa-------CCCUUgCU--CGGCGCCCu--CU- -5'
24533 3' -57.3 NC_005264.1 + 162290 0.67 0.804992
Target:  5'- -cGCUCgggcauagGGGAGgGAacGCCGCGGGucuGAu -3'
miRNA:   3'- cuUGAGa-------CCCUUgCU--CGGCGCCCu--CU- -5'
24533 3' -57.3 NC_005264.1 + 30888 0.68 0.787198
Target:  5'- --uCUCgaucGGGGACGcGUCGgGGGAGGa -3'
miRNA:   3'- cuuGAGa---CCCUUGCuCGGCgCCCUCU- -5'
24533 3' -57.3 NC_005264.1 + 149914 0.68 0.787198
Target:  5'- --uCUCgaucGGGGACGcGUCGgGGGAGGa -3'
miRNA:   3'- cuuGAGa---CCCUUGCuCGGCgCCCUCU- -5'
24533 3' -57.3 NC_005264.1 + 102918 0.68 0.750051
Target:  5'- gGAACUCUuGGc-CGAGCUGCGcGGAGc -3'
miRNA:   3'- -CUUGAGAcCCuuGCUCGGCGC-CCUCu -5'
24533 3' -57.3 NC_005264.1 + 73595 0.69 0.74049
Target:  5'- gGAAgUUUGGGGugGGGCCGCaGGc-- -3'
miRNA:   3'- -CUUgAGACCCUugCUCGGCGcCCucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.