miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24534 3' -61.2 NC_005264.1 + 132890 0.66 0.758446
Target:  5'- aUCCUAGGaucGGuuGACcggcuAGGcgCAGCGGCg -3'
miRNA:   3'- gGGGGUCC---CCggCUG-----UCCa-GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 21875 0.66 0.749329
Target:  5'- gCCCCgAGGaaaaGGCCGAgCuGGcgcgUAAUGGCa -3'
miRNA:   3'- -GGGGgUCC----CCGGCU-GuCCa---GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 150567 0.66 0.749329
Target:  5'- gCCgCCAGGGuaCGGCAucGUCAucucagggACGGCc -3'
miRNA:   3'- -GGgGGUCCCcgGCUGUc-CAGU--------UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 132929 0.66 0.749329
Target:  5'- cUCCCUAGc-GCCGACGGGguagCGccgcacgccuucGCGGCa -3'
miRNA:   3'- -GGGGGUCccCGGCUGUCCa---GU------------UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 63635 0.66 0.740118
Target:  5'- aUCCgAGGGGCUGAgGuuGGacuugaucugcUCAGCGGUg -3'
miRNA:   3'- gGGGgUCCCCGGCUgU--CC-----------AGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 40705 0.66 0.740118
Target:  5'- aCUacgaaGGGGGCCGggaaucgcccgaACGGGUCcuCGGCc -3'
miRNA:   3'- gGGgg---UCCCCGGC------------UGUCCAGuuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 159731 0.66 0.740118
Target:  5'- aCUacgaaGGGGGCCGggaaucgcccgaACGGGUCcuCGGCc -3'
miRNA:   3'- gGGgg---UCCCCGGC------------UGUCCAGuuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 149717 0.66 0.73455
Target:  5'- uCCCCUagaagcgcuugcuguAGuGGcGCCGGCGGG-CAGaGGCg -3'
miRNA:   3'- -GGGGG---------------UC-CC-CGGCUGUCCaGUUgCCG- -5'
24534 3' -61.2 NC_005264.1 + 71826 0.66 0.730822
Target:  5'- gCCgCCCGcGGGGUcgcgaauaaCGACGcGUCGcgGCGGCg -3'
miRNA:   3'- -GG-GGGU-CCCCG---------GCUGUcCAGU--UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 118632 0.66 0.72145
Target:  5'- uCCCUCGccGGCCaaguUAGGUCAAUGGUg -3'
miRNA:   3'- -GGGGGUccCCGGcu--GUCCAGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 89364 0.66 0.715793
Target:  5'- uCUCCCGGGccuuccugacggcaaGcGCCGGCuAGGcCAAgGGCa -3'
miRNA:   3'- -GGGGGUCC---------------C-CGGCUG-UCCaGUUgCCG- -5'
24534 3' -61.2 NC_005264.1 + 106109 0.66 0.712008
Target:  5'- gCCUCCGcGGaaaGGCaCGACAGaG-CAAUGGCa -3'
miRNA:   3'- -GGGGGU-CC---CCG-GCUGUC-CaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 123094 0.66 0.712008
Target:  5'- uCUCCCGacagcGGGGCUguugcacgGGCGGcGUCG-CGGCa -3'
miRNA:   3'- -GGGGGU-----CCCCGG--------CUGUC-CAGUuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 4067 0.66 0.712008
Target:  5'- uCUCCCGacagcGGGGCUguugcacgGGCGGcGUCG-CGGCa -3'
miRNA:   3'- -GGGGGU-----CCCCGG--------CUGUC-CAGUuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 76009 0.66 0.708214
Target:  5'- cCCCCUAGaagaucugaagucGGCCGACGa--CAGCGGCa -3'
miRNA:   3'- -GGGGGUCc------------CCGGCUGUccaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 92918 0.66 0.702505
Target:  5'- --gCCGGGGGaUCGugAGcaaggaguGUCGGCGGCu -3'
miRNA:   3'- gggGGUCCCC-GGCugUC--------CAGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 159973 0.67 0.692949
Target:  5'- gCCCCGGucgaucgcaGCCGcaGCGGG-CGACGGCg -3'
miRNA:   3'- gGGGGUCcc-------CGGC--UGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 125797 0.67 0.692949
Target:  5'- uUCCacaAGGGaGCCaggGAUGGGUgCGGCGGCu -3'
miRNA:   3'- gGGGg--UCCC-CGG---CUGUCCA-GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 20233 0.67 0.692949
Target:  5'- gCCCCGcgcgugacGGGUgGGCAGGgguuGCGGCg -3'
miRNA:   3'- gGGGGUc-------CCCGgCUGUCCagu-UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 40946 0.67 0.692949
Target:  5'- gCCCCGGucgaucgcaGCCGcaGCGGG-CGACGGCg -3'
miRNA:   3'- gGGGGUCcc-------CGGC--UGUCCaGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.