Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24534 | 3' | -61.2 | NC_005264.1 | + | 159731 | 0.66 | 0.740118 |
Target: 5'- aCUacgaaGGGGGCCGggaaucgcccgaACGGGUCcuCGGCc -3' miRNA: 3'- gGGgg---UCCCCGGC------------UGUCCAGuuGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 132929 | 0.66 | 0.749329 |
Target: 5'- cUCCCUAGc-GCCGACGGGguagCGccgcacgccuucGCGGCa -3' miRNA: 3'- -GGGGGUCccCGGCUGUCCa---GU------------UGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 71826 | 0.66 | 0.730822 |
Target: 5'- gCCgCCCGcGGGGUcgcgaauaaCGACGcGUCGcgGCGGCg -3' miRNA: 3'- -GG-GGGU-CCCCG---------GCUGUcCAGU--UGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 89364 | 0.66 | 0.715793 |
Target: 5'- uCUCCCGGGccuuccugacggcaaGcGCCGGCuAGGcCAAgGGCa -3' miRNA: 3'- -GGGGGUCC---------------C-CGGCUG-UCCaGUUgCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 106109 | 0.66 | 0.712008 |
Target: 5'- gCCUCCGcGGaaaGGCaCGACAGaG-CAAUGGCa -3' miRNA: 3'- -GGGGGU-CC---CCG-GCUGUC-CaGUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 123094 | 0.66 | 0.712008 |
Target: 5'- uCUCCCGacagcGGGGCUguugcacgGGCGGcGUCG-CGGCa -3' miRNA: 3'- -GGGGGU-----CCCCGG--------CUGUC-CAGUuGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 92918 | 0.66 | 0.702505 |
Target: 5'- --gCCGGGGGaUCGugAGcaaggaguGUCGGCGGCu -3' miRNA: 3'- gggGGUCCCC-GGCugUC--------CAGUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 63635 | 0.66 | 0.740118 |
Target: 5'- aUCCgAGGGGCUGAgGuuGGacuugaucugcUCAGCGGUg -3' miRNA: 3'- gGGGgUCCCCGGCUgU--CC-----------AGUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 118632 | 0.66 | 0.72145 |
Target: 5'- uCCCUCGccGGCCaaguUAGGUCAAUGGUg -3' miRNA: 3'- -GGGGGUccCCGGcu--GUCCAGUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 4067 | 0.66 | 0.712008 |
Target: 5'- uCUCCCGacagcGGGGCUguugcacgGGCGGcGUCG-CGGCa -3' miRNA: 3'- -GGGGGU-----CCCCGG--------CUGUC-CAGUuGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 21875 | 0.66 | 0.749329 |
Target: 5'- gCCCCgAGGaaaaGGCCGAgCuGGcgcgUAAUGGCa -3' miRNA: 3'- -GGGGgUCC----CCGGCU-GuCCa---GUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 40705 | 0.66 | 0.740118 |
Target: 5'- aCUacgaaGGGGGCCGggaaucgcccgaACGGGUCcuCGGCc -3' miRNA: 3'- gGGgg---UCCCCGGC------------UGUCCAGuuGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 132890 | 0.66 | 0.758446 |
Target: 5'- aUCCUAGGaucGGuuGACcggcuAGGcgCAGCGGCg -3' miRNA: 3'- gGGGGUCC---CCggCUG-----UCCa-GUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 150567 | 0.66 | 0.749329 |
Target: 5'- gCCgCCAGGGuaCGGCAucGUCAucucagggACGGCc -3' miRNA: 3'- -GGgGGUCCCcgGCUGUc-CAGU--------UGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 76009 | 0.66 | 0.708214 |
Target: 5'- cCCCCUAGaagaucugaagucGGCCGACGa--CAGCGGCa -3' miRNA: 3'- -GGGGGUCc------------CCGGCUGUccaGUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 149717 | 0.66 | 0.73455 |
Target: 5'- uCCCCUagaagcgcuugcuguAGuGGcGCCGGCGGG-CAGaGGCg -3' miRNA: 3'- -GGGGG---------------UC-CC-CGGCUGUCCaGUUgCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 42299 | 0.67 | 0.64463 |
Target: 5'- gCUUCC-GGGGCCGucGCAGGgcugcCGGCa -3' miRNA: 3'- -GGGGGuCCCCGGC--UGUCCaguu-GCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 159973 | 0.67 | 0.692949 |
Target: 5'- gCCCCGGucgaucgcaGCCGcaGCGGG-CGACGGCg -3' miRNA: 3'- gGGGGUCcc-------CGGC--UGUCCaGUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 125797 | 0.67 | 0.692949 |
Target: 5'- uUCCacaAGGGaGCCaggGAUGGGUgCGGCGGCu -3' miRNA: 3'- gGGGg--UCCC-CGG---CUGUCCA-GUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 20233 | 0.67 | 0.692949 |
Target: 5'- gCCCCGcgcgugacGGGUgGGCAGGgguuGCGGCg -3' miRNA: 3'- gGGGGUc-------CCCGgCUGUCCagu-UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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