miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24534 3' -61.2 NC_005264.1 + 125611 1.13 0.000667
Target:  5'- cCCCCCAGGGGCCGACAGGUCAACGGCg -3'
miRNA:   3'- -GGGGGUCCCCGGCUGUCCAGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 6584 1.13 0.000667
Target:  5'- cCCCCCAGGGGCCGACAGGUCAACGGCg -3'
miRNA:   3'- -GGGGGUCCCCGGCUGUCCAGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 39076 0.8 0.136174
Target:  5'- aCCCCCGGacgccGGCuCGGCGGG-CAGCGGCg -3'
miRNA:   3'- -GGGGGUCc----CCG-GCUGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 158103 0.8 0.136174
Target:  5'- aCCCCCGGacgccGGCuCGGCGGG-CAGCGGCg -3'
miRNA:   3'- -GGGGGUCc----CCG-GCUGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 5398 0.75 0.270215
Target:  5'- uUgCCAGGGGCCaGCAGGgCGuacGCGGCa -3'
miRNA:   3'- gGgGGUCCCCGGcUGUCCaGU---UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 124425 0.75 0.270215
Target:  5'- uUgCCAGGGGCCaGCAGGgCGuacGCGGCa -3'
miRNA:   3'- gGgGGUCCCCGGcUGUCCaGU---UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 88033 0.74 0.282585
Target:  5'- uUCCUC-GGGGCCGAagcguaCAGGUCAAUacgGGCg -3'
miRNA:   3'- -GGGGGuCCCCGGCU------GUCCAGUUG---CCG- -5'
24534 3' -61.2 NC_005264.1 + 35489 0.73 0.336538
Target:  5'- aCCCUAGGGGaCGACGGcGaCGccGCGGCg -3'
miRNA:   3'- gGGGGUCCCCgGCUGUC-CaGU--UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 154516 0.73 0.336538
Target:  5'- aCCCUAGGGGaCGACGGcGaCGccGCGGCg -3'
miRNA:   3'- gGGGGUCCCCgGCUGUC-CaGU--UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 98503 0.73 0.344519
Target:  5'- uCUgCCGGaGGcGCCGACGGGgggccucagucuuggCAGCGGCa -3'
miRNA:   3'- -GGgGGUC-CC-CGGCUGUCCa--------------GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 7997 0.73 0.351149
Target:  5'- gCCgCCAuugcGGGGCCGGCAGaGgcgcccgccaCGACGGCg -3'
miRNA:   3'- -GGgGGU----CCCCGGCUGUC-Ca---------GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 127024 0.73 0.351149
Target:  5'- gCCgCCAuugcGGGGCCGGCAGaGgcgcccgccaCGACGGCg -3'
miRNA:   3'- -GGgGGU----CCCCGGCUGUC-Ca---------GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 4015 0.73 0.358621
Target:  5'- gCCCaCCAGGGGCuUGGCGGGcCGAU-GCa -3'
miRNA:   3'- -GGG-GGUCCCCG-GCUGUCCaGUUGcCG- -5'
24534 3' -61.2 NC_005264.1 + 123042 0.73 0.358621
Target:  5'- gCCCaCCAGGGGCuUGGCGGGcCGAU-GCa -3'
miRNA:   3'- -GGG-GGUCCCCG-GCUGUCCaGUUGcCG- -5'
24534 3' -61.2 NC_005264.1 + 20302 0.73 0.366204
Target:  5'- gCCCCgAGGGGCUGA--GGUCgcuguaucGugGGCa -3'
miRNA:   3'- -GGGGgUCCCCGGCUguCCAG--------UugCCG- -5'
24534 3' -61.2 NC_005264.1 + 49045 0.73 0.366204
Target:  5'- uUCCCUGGGGGCa-GCGGGU-GGCGGUa -3'
miRNA:   3'- -GGGGGUCCCCGgcUGUCCAgUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 54573 0.72 0.381698
Target:  5'- uUCUCguGGGGCgCGACGGGUCGgagAUGGa -3'
miRNA:   3'- -GGGGguCCCCG-GCUGUCCAGU---UGCCg -5'
24534 3' -61.2 NC_005264.1 + 161438 0.71 0.422295
Target:  5'- aCCggCCAGGGGUCGuACGGGaaugCGACGcGCg -3'
miRNA:   3'- gGG--GGUCCCCGGC-UGUCCa---GUUGC-CG- -5'
24534 3' -61.2 NC_005264.1 + 18540 0.71 0.422295
Target:  5'- uCCCCCugAGGGcgcGCCGGCGucaGUCGgaGCGGCa -3'
miRNA:   3'- -GGGGG--UCCC---CGGCUGUc--CAGU--UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 124751 0.71 0.429028
Target:  5'- uUCCCgGGGGGCCaaggaagcacGGCGGGUaggcauugugagAGCGGCg -3'
miRNA:   3'- -GGGGgUCCCCGG----------CUGUCCAg-----------UUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.