miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24534 3' -61.2 NC_005264.1 + 139965 0.71 0.430721
Target:  5'- gCCCgaaCCAGGGGUcuauuuCGAUAGGUUcgcGCGGCc -3'
miRNA:   3'- -GGG---GGUCCCCG------GCUGUCCAGu--UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 79209 0.71 0.439245
Target:  5'- aCCCUGGGgcuaGGCUGcguGCAGG-CGGCGGCg -3'
miRNA:   3'- gGGGGUCC----CCGGC---UGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 88226 0.71 0.456577
Target:  5'- gCgCCAGGGGgaaCGugGGGUCAggcGCGGg -3'
miRNA:   3'- gGgGGUCCCCg--GCugUCCAGU---UGCCg -5'
24534 3' -61.2 NC_005264.1 + 127838 0.7 0.47427
Target:  5'- gCCUCCGcGGcGGCCGGC-GGUCuagaaccCGGCg -3'
miRNA:   3'- -GGGGGU-CC-CCGGCUGuCCAGuu-----GCCG- -5'
24534 3' -61.2 NC_005264.1 + 57986 0.7 0.483244
Target:  5'- gUCCCCGcgcGGcGGCCGu--GGcUCAGCGGCc -3'
miRNA:   3'- -GGGGGU---CC-CCGGCuguCC-AGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 161935 0.7 0.498685
Target:  5'- cCCCCCAgcggcccgcgacacGGGGCCGuACAcccaGUCGuacguccgggcGCGGCa -3'
miRNA:   3'- -GGGGGU--------------CCCCGGC-UGUc---CAGU-----------UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 157336 0.7 0.501433
Target:  5'- gCCUUCGcGGaGGCCGACgaGGGUUGGCGGg -3'
miRNA:   3'- -GGGGGU-CC-CCGGCUG--UCCAGUUGCCg -5'
24534 3' -61.2 NC_005264.1 + 38309 0.7 0.501433
Target:  5'- gCCUUCGcGGaGGCCGACgaGGGUUGGCGGg -3'
miRNA:   3'- -GGGGGU-CC-CCGGCUG--UCCAGUUGCCg -5'
24534 3' -61.2 NC_005264.1 + 148640 0.7 0.501433
Target:  5'- uCCgCCGu-GGCCGAUGGGgCGACGGCg -3'
miRNA:   3'- -GGgGGUccCCGGCUGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 37098 0.7 0.519915
Target:  5'- cCCgCCCaAGGuGGUgGGCAGGaCGAgGGCg -3'
miRNA:   3'- -GG-GGG-UCC-CCGgCUGUCCaGUUgCCG- -5'
24534 3' -61.2 NC_005264.1 + 156125 0.7 0.519915
Target:  5'- cCCgCCCaAGGuGGUgGGCAGGaCGAgGGCg -3'
miRNA:   3'- -GG-GGG-UCC-CCGgCUGUCCaGUUgCCG- -5'
24534 3' -61.2 NC_005264.1 + 115387 0.7 0.519915
Target:  5'- aCCCCCAGGGGC-----GGUCu-UGGCa -3'
miRNA:   3'- -GGGGGUCCCCGgcuguCCAGuuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 143639 0.69 0.547169
Target:  5'- aUCCCAaggucguGGGGCCGAC-GGUCGGCcccGGa -3'
miRNA:   3'- gGGGGU-------CCCCGGCUGuCCAGUUG---CCg -5'
24534 3' -61.2 NC_005264.1 + 42909 0.69 0.556675
Target:  5'- cCCCCCGcggcccgcgacacGGGGCCGuACAcccaGUCGuacguccgggcGCGGCa -3'
miRNA:   3'- -GGGGGU-------------CCCCGGC-UGUc---CAGU-----------UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 160441 0.69 0.556675
Target:  5'- uUCCUAGGcaGGCCGGCgccgggcuccugcGGG-CGACGGCc -3'
miRNA:   3'- gGGGGUCC--CCGGCUG-------------UCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 41414 0.69 0.556675
Target:  5'- uUCCUAGGcaGGCCGGCgccgggcuccugcGGG-CGACGGCc -3'
miRNA:   3'- gGGGGUCC--CCGGCUG-------------UCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 117951 0.69 0.557628
Target:  5'- gCCCCCAGacgacgacGGGCCcgccucccCAGGcugcagaucucUCGACGGCa -3'
miRNA:   3'- -GGGGGUC--------CCCGGcu------GUCC-----------AGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 53318 0.69 0.564313
Target:  5'- -gCCCAGGGGCUGcuuggccaGCAGGggcagCccaaccagccuaagGACGGCg -3'
miRNA:   3'- ggGGGUCCCCGGC--------UGUCCa----G--------------UUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 140665 0.69 0.567185
Target:  5'- gCCUCUAGGGGCUguuguGACGuacGGcCcGCGGCg -3'
miRNA:   3'- -GGGGGUCCCCGG-----CUGU---CCaGuUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 2884 0.69 0.567185
Target:  5'- -aCCgGGGcgcGGCgCGGCGGGgagggCGACGGCg -3'
miRNA:   3'- ggGGgUCC---CCG-GCUGUCCa----GUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.