miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24534 3' -61.2 NC_005264.1 + 20233 0.67 0.692949
Target:  5'- gCCCCGcgcgugacGGGUgGGCAGGgguuGCGGCg -3'
miRNA:   3'- gGGGGUc-------CCCGgCUGUCCagu-UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 78213 0.67 0.683346
Target:  5'- aCCgCCAGGGGCaCGuACGGaG-CAACGcuGCa -3'
miRNA:   3'- -GGgGGUCCCCG-GC-UGUC-CaGUUGC--CG- -5'
24534 3' -61.2 NC_005264.1 + 133383 0.67 0.683346
Target:  5'- cCCCCCAauccgcguGGGGCCGACc-GagGACuGCu -3'
miRNA:   3'- -GGGGGU--------CCCCGGCUGucCagUUGcCG- -5'
24534 3' -61.2 NC_005264.1 + 64800 0.67 0.673706
Target:  5'- gCCCCCAuGGGCaccggaaGcGCAGGgcucaCGACGGUu -3'
miRNA:   3'- -GGGGGUcCCCGg------C-UGUCCa----GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 161282 0.67 0.673706
Target:  5'- gUCCggCCGGGGcccgccuauuGCCGGCGcGGUCAACGccGCg -3'
miRNA:   3'- -GGG--GGUCCC----------CGGCUGU-CCAGUUGC--CG- -5'
24534 3' -61.2 NC_005264.1 + 42255 0.67 0.673706
Target:  5'- gUCCggCCGGGGcccgccuauuGCCGGCGcGGUCAACGccGCg -3'
miRNA:   3'- -GGG--GGUCCC----------CGGCUGU-CCAGUUGC--CG- -5'
24534 3' -61.2 NC_005264.1 + 5260 0.67 0.661128
Target:  5'- gCgCCGGGaGGCgagucgcggccggaCGGCGGGgCGGCGGCu -3'
miRNA:   3'- gGgGGUCC-CCG--------------GCUGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 124287 0.67 0.661128
Target:  5'- gCgCCGGGaGGCgagucgcggccggaCGGCGGGgCGGCGGCu -3'
miRNA:   3'- gGgGGUCC-CCG--------------GCUGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 42299 0.67 0.64463
Target:  5'- gCUUCC-GGGGCCGucGCAGGgcugcCGGCa -3'
miRNA:   3'- -GGGGGuCCCCGGC--UGUCCaguu-GCCG- -5'
24534 3' -61.2 NC_005264.1 + 138462 0.68 0.633938
Target:  5'- gCCgCCGGGGgaGCCGcgaaGCcGGUCAugccagaGCGGCg -3'
miRNA:   3'- -GGgGGUCCC--CGGC----UGuCCAGU-------UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 95334 0.68 0.633938
Target:  5'- gCCgCCGGGcGCCGcgaaacggacucgGCGGGgCGGCGGCc -3'
miRNA:   3'- -GGgGGUCCcCGGC-------------UGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 121753 0.68 0.625189
Target:  5'- gCCCCGGccGGGcCCGucuucUAGGUUuAACGGCg -3'
miRNA:   3'- gGGGGUC--CCC-GGCu----GUCCAG-UUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 9093 0.68 0.605768
Target:  5'- gCCagCuGGGGCCGAauauGGGUCuuCGGUg -3'
miRNA:   3'- gGGg-GuCCCCGGCUg---UCCAGuuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 11555 0.68 0.605768
Target:  5'- cCCCCCGGGGGaaGuguGCAGuUCucCGGUg -3'
miRNA:   3'- -GGGGGUCCCCggC---UGUCcAGuuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 128120 0.68 0.605768
Target:  5'- gCCagCuGGGGCCGAauauGGGUCuuCGGUg -3'
miRNA:   3'- gGGg-GuCCCCGGCUg---UCCAGuuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 120001 0.68 0.59608
Target:  5'- gCCCCuGGGG-CGGCAGGUgGgccuccccccucGCGGa -3'
miRNA:   3'- gGGGGuCCCCgGCUGUCCAgU------------UGCCg -5'
24534 3' -61.2 NC_005264.1 + 46425 0.68 0.59608
Target:  5'- gCCCCCAgcgaccugccgcGGGcucagcgagaGCCGACgaagAGGUCucccgcGACGGCa -3'
miRNA:   3'- -GGGGGU------------CCC----------CGGCUG----UCCAG------UUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 101223 0.68 0.586417
Target:  5'- gCCCCCAGuauGCCGGC-GG-CGACGGg -3'
miRNA:   3'- -GGGGGUCcc-CGGCUGuCCaGUUGCCg -5'
24534 3' -61.2 NC_005264.1 + 3314 0.68 0.586417
Target:  5'- uUCCgaaCGGcGGGCCGACGGG-CAAuacUGGCc -3'
miRNA:   3'- -GGGg--GUC-CCCGGCUGUCCaGUU---GCCG- -5'
24534 3' -61.2 NC_005264.1 + 122341 0.68 0.586417
Target:  5'- uUCCgaaCGGcGGGCCGACGGG-CAAuacUGGCc -3'
miRNA:   3'- -GGGg--GUC-CCCGGCUGUCCaGUU---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.