Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24534 | 3' | -61.2 | NC_005264.1 | + | 144312 | 0.68 | 0.586417 |
Target: 5'- gCCCUCAGGGGgaGACGGcGccccCGAuCGGCa -3' miRNA: 3'- -GGGGGUCCCCggCUGUC-Ca---GUU-GCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 122341 | 0.68 | 0.586417 |
Target: 5'- uUCCgaaCGGcGGGCCGACGGG-CAAuacUGGCc -3' miRNA: 3'- -GGGg--GUC-CCCGGCUGUCCaGUU---GCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 101223 | 0.68 | 0.586417 |
Target: 5'- gCCCCCAGuauGCCGGC-GG-CGACGGg -3' miRNA: 3'- -GGGGGUCcc-CGGCUGuCCaGUUGCCg -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 95343 | 0.68 | 0.585452 |
Target: 5'- -aUCCGaggcaauGGGGCCGACGGG-CGGCGcGUg -3' miRNA: 3'- ggGGGU-------CCCCGGCUGUCCaGUUGC-CG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 2884 | 0.69 | 0.567185 |
Target: 5'- -aCCgGGGcgcGGCgCGGCGGGgagggCGACGGCg -3' miRNA: 3'- ggGGgUCC---CCG-GCUGUCCa----GUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 121910 | 0.69 | 0.567185 |
Target: 5'- -aCCgGGGcgcGGCgCGGCGGGgagggCGACGGCg -3' miRNA: 3'- ggGGgUCC---CCG-GCUGUCCa----GUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 140665 | 0.69 | 0.567185 |
Target: 5'- gCCUCUAGGGGCUguuguGACGuacGGcCcGCGGCg -3' miRNA: 3'- -GGGGGUCCCCGG-----CUGU---CCaGuUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 53318 | 0.69 | 0.564313 |
Target: 5'- -gCCCAGGGGCUGcuuggccaGCAGGggcagCccaaccagccuaagGACGGCg -3' miRNA: 3'- ggGGGUCCCCGGC--------UGUCCa----G--------------UUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 117951 | 0.69 | 0.557628 |
Target: 5'- gCCCCCAGacgacgacGGGCCcgccucccCAGGcugcagaucucUCGACGGCa -3' miRNA: 3'- -GGGGGUC--------CCCGGcu------GUCC-----------AGUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 41414 | 0.69 | 0.556675 |
Target: 5'- uUCCUAGGcaGGCCGGCgccgggcuccugcGGG-CGACGGCc -3' miRNA: 3'- gGGGGUCC--CCGGCUG-------------UCCaGUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 160441 | 0.69 | 0.556675 |
Target: 5'- uUCCUAGGcaGGCCGGCgccgggcuccugcGGG-CGACGGCc -3' miRNA: 3'- gGGGGUCC--CCGGCUG-------------UCCaGUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 42909 | 0.69 | 0.556675 |
Target: 5'- cCCCCCGcggcccgcgacacGGGGCCGuACAcccaGUCGuacguccgggcGCGGCa -3' miRNA: 3'- -GGGGGU-------------CCCCGGC-UGUc---CAGU-----------UGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 143639 | 0.69 | 0.547169 |
Target: 5'- aUCCCAaggucguGGGGCCGAC-GGUCGGCcccGGa -3' miRNA: 3'- gGGGGU-------CCCCGGCUGuCCAGUUG---CCg -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 37098 | 0.7 | 0.519915 |
Target: 5'- cCCgCCCaAGGuGGUgGGCAGGaCGAgGGCg -3' miRNA: 3'- -GG-GGG-UCC-CCGgCUGUCCaGUUgCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 156125 | 0.7 | 0.519915 |
Target: 5'- cCCgCCCaAGGuGGUgGGCAGGaCGAgGGCg -3' miRNA: 3'- -GG-GGG-UCC-CCGgCUGUCCaGUUgCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 115387 | 0.7 | 0.519915 |
Target: 5'- aCCCCCAGGGGC-----GGUCu-UGGCa -3' miRNA: 3'- -GGGGGUCCCCGgcuguCCAGuuGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 148640 | 0.7 | 0.501433 |
Target: 5'- uCCgCCGu-GGCCGAUGGGgCGACGGCg -3' miRNA: 3'- -GGgGGUccCCGGCUGUCCaGUUGCCG- -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 38309 | 0.7 | 0.501433 |
Target: 5'- gCCUUCGcGGaGGCCGACgaGGGUUGGCGGg -3' miRNA: 3'- -GGGGGU-CC-CCGGCUG--UCCAGUUGCCg -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 157336 | 0.7 | 0.501433 |
Target: 5'- gCCUUCGcGGaGGCCGACgaGGGUUGGCGGg -3' miRNA: 3'- -GGGGGU-CC-CCGGCUG--UCCAGUUGCCg -5' |
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24534 | 3' | -61.2 | NC_005264.1 | + | 161935 | 0.7 | 0.498685 |
Target: 5'- cCCCCCAgcggcccgcgacacGGGGCCGuACAcccaGUCGuacguccgggcGCGGCa -3' miRNA: 3'- -GGGGGU--------------CCCCGGC-UGUc---CAGU-----------UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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