miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24534 3' -61.2 NC_005264.1 + 975 0.68 0.586417
Target:  5'- gCCCCuGGGG-CGGCAGGUgGgccucccccucGCGGa -3'
miRNA:   3'- gGGGGuCCCCgGCUGUCCAgU-----------UGCCg -5'
24534 3' -61.2 NC_005264.1 + 2884 0.69 0.567185
Target:  5'- -aCCgGGGcgcGGCgCGGCGGGgagggCGACGGCg -3'
miRNA:   3'- ggGGgUCC---CCG-GCUGUCCa----GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 3314 0.68 0.586417
Target:  5'- uUCCgaaCGGcGGGCCGACGGG-CAAuacUGGCc -3'
miRNA:   3'- -GGGg--GUC-CCCGGCUGUCCaGUU---GCCG- -5'
24534 3' -61.2 NC_005264.1 + 4015 0.73 0.358621
Target:  5'- gCCCaCCAGGGGCuUGGCGGGcCGAU-GCa -3'
miRNA:   3'- -GGG-GGUCCCCG-GCUGUCCaGUUGcCG- -5'
24534 3' -61.2 NC_005264.1 + 4067 0.66 0.712008
Target:  5'- uCUCCCGacagcGGGGCUguugcacgGGCGGcGUCG-CGGCa -3'
miRNA:   3'- -GGGGGU-----CCCCGG--------CUGUC-CAGUuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 5260 0.67 0.661128
Target:  5'- gCgCCGGGaGGCgagucgcggccggaCGGCGGGgCGGCGGCu -3'
miRNA:   3'- gGgGGUCC-CCG--------------GCUGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 5398 0.75 0.270215
Target:  5'- uUgCCAGGGGCCaGCAGGgCGuacGCGGCa -3'
miRNA:   3'- gGgGGUCCCCGGcUGUCCaGU---UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 6584 1.13 0.000667
Target:  5'- cCCCCCAGGGGCCGACAGGUCAACGGCg -3'
miRNA:   3'- -GGGGGUCCCCGGCUGUCCAGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 6771 0.67 0.692949
Target:  5'- uUCCacaAGGGaGCCaggGAUGGGUgCGGCGGCu -3'
miRNA:   3'- gGGGg--UCCC-CGG---CUGUCCA-GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 7997 0.73 0.351149
Target:  5'- gCCgCCAuugcGGGGCCGGCAGaGgcgcccgccaCGACGGCg -3'
miRNA:   3'- -GGgGGU----CCCCGGCUGUC-Ca---------GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 9093 0.68 0.605768
Target:  5'- gCCagCuGGGGCCGAauauGGGUCuuCGGUg -3'
miRNA:   3'- gGGg-GuCCCCGGCUg---UCCAGuuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 11555 0.68 0.605768
Target:  5'- cCCCCCGGGGGaaGuguGCAGuUCucCGGUg -3'
miRNA:   3'- -GGGGGUCCCCggC---UGUCcAGuuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 18540 0.71 0.422295
Target:  5'- uCCCCCugAGGGcgcGCCGGCGucaGUCGgaGCGGCa -3'
miRNA:   3'- -GGGGG--UCCC---CGGCUGUc--CAGU--UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 19271 0.68 0.586417
Target:  5'- gCCCC-GGGGaCGGCAGaGUCGGgGGa -3'
miRNA:   3'- gGGGGuCCCCgGCUGUC-CAGUUgCCg -5'
24534 3' -61.2 NC_005264.1 + 20233 0.67 0.692949
Target:  5'- gCCCCGcgcgugacGGGUgGGCAGGgguuGCGGCg -3'
miRNA:   3'- gGGGGUc-------CCCGgCUGUCCagu-UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 20302 0.73 0.366204
Target:  5'- gCCCCgAGGGGCUGA--GGUCgcuguaucGugGGCa -3'
miRNA:   3'- -GGGGgUCCCCGGCUguCCAG--------UugCCG- -5'
24534 3' -61.2 NC_005264.1 + 21875 0.66 0.749329
Target:  5'- gCCCCgAGGaaaaGGCCGAgCuGGcgcgUAAUGGCa -3'
miRNA:   3'- -GGGGgUCC----CCGGCU-GuCCa---GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 35489 0.73 0.336538
Target:  5'- aCCCUAGGGGaCGACGGcGaCGccGCGGCg -3'
miRNA:   3'- gGGGGUCCCCgGCUGUC-CaGU--UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 37098 0.7 0.519915
Target:  5'- cCCgCCCaAGGuGGUgGGCAGGaCGAgGGCg -3'
miRNA:   3'- -GG-GGG-UCC-CCGgCUGUCCaGUUgCCG- -5'
24534 3' -61.2 NC_005264.1 + 38309 0.7 0.501433
Target:  5'- gCCUUCGcGGaGGCCGACgaGGGUUGGCGGg -3'
miRNA:   3'- -GGGGGU-CC-CCGGCUG--UCCAGUUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.