miRNA display CGI


Results 21 - 40 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24534 3' -61.2 NC_005264.1 + 39076 0.8 0.136174
Target:  5'- aCCCCCGGacgccGGCuCGGCGGG-CAGCGGCg -3'
miRNA:   3'- -GGGGGUCc----CCG-GCUGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 40705 0.66 0.740118
Target:  5'- aCUacgaaGGGGGCCGggaaucgcccgaACGGGUCcuCGGCc -3'
miRNA:   3'- gGGgg---UCCCCGGC------------UGUCCAGuuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 40946 0.67 0.692949
Target:  5'- gCCCCGGucgaucgcaGCCGcaGCGGG-CGACGGCg -3'
miRNA:   3'- gGGGGUCcc-------CGGC--UGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 41414 0.69 0.556675
Target:  5'- uUCCUAGGcaGGCCGGCgccgggcuccugcGGG-CGACGGCc -3'
miRNA:   3'- gGGGGUCC--CCGGCUG-------------UCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 42255 0.67 0.673706
Target:  5'- gUCCggCCGGGGcccgccuauuGCCGGCGcGGUCAACGccGCg -3'
miRNA:   3'- -GGG--GGUCCC----------CGGCUGU-CCAGUUGC--CG- -5'
24534 3' -61.2 NC_005264.1 + 42299 0.67 0.64463
Target:  5'- gCUUCC-GGGGCCGucGCAGGgcugcCGGCa -3'
miRNA:   3'- -GGGGGuCCCCGGC--UGUCCaguu-GCCG- -5'
24534 3' -61.2 NC_005264.1 + 42909 0.69 0.556675
Target:  5'- cCCCCCGcggcccgcgacacGGGGCCGuACAcccaGUCGuacguccgggcGCGGCa -3'
miRNA:   3'- -GGGGGU-------------CCCCGGC-UGUc---CAGU-----------UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 46425 0.68 0.59608
Target:  5'- gCCCCCAgcgaccugccgcGGGcucagcgagaGCCGACgaagAGGUCucccgcGACGGCa -3'
miRNA:   3'- -GGGGGU------------CCC----------CGGCUG----UCCAG------UUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 49045 0.73 0.366204
Target:  5'- uUCCCUGGGGGCa-GCGGGU-GGCGGUa -3'
miRNA:   3'- -GGGGGUCCCCGgcUGUCCAgUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 53318 0.69 0.564313
Target:  5'- -gCCCAGGGGCUGcuuggccaGCAGGggcagCccaaccagccuaagGACGGCg -3'
miRNA:   3'- ggGGGUCCCCGGC--------UGUCCa----G--------------UUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 54573 0.72 0.381698
Target:  5'- uUCUCguGGGGCgCGACGGGUCGgagAUGGa -3'
miRNA:   3'- -GGGGguCCCCG-GCUGUCCAGU---UGCCg -5'
24534 3' -61.2 NC_005264.1 + 57986 0.7 0.483244
Target:  5'- gUCCCCGcgcGGcGGCCGu--GGcUCAGCGGCc -3'
miRNA:   3'- -GGGGGU---CC-CCGGCuguCC-AGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 63635 0.66 0.740118
Target:  5'- aUCCgAGGGGCUGAgGuuGGacuugaucugcUCAGCGGUg -3'
miRNA:   3'- gGGGgUCCCCGGCUgU--CC-----------AGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 64800 0.67 0.673706
Target:  5'- gCCCCCAuGGGCaccggaaGcGCAGGgcucaCGACGGUu -3'
miRNA:   3'- -GGGGGUcCCCGg------C-UGUCCa----GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 71826 0.66 0.730822
Target:  5'- gCCgCCCGcGGGGUcgcgaauaaCGACGcGUCGcgGCGGCg -3'
miRNA:   3'- -GG-GGGU-CCCCG---------GCUGUcCAGU--UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 76009 0.66 0.708214
Target:  5'- cCCCCUAGaagaucugaagucGGCCGACGa--CAGCGGCa -3'
miRNA:   3'- -GGGGGUCc------------CCGGCUGUccaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 78213 0.67 0.683346
Target:  5'- aCCgCCAGGGGCaCGuACGGaG-CAACGcuGCa -3'
miRNA:   3'- -GGgGGUCCCCG-GC-UGUC-CaGUUGC--CG- -5'
24534 3' -61.2 NC_005264.1 + 79209 0.71 0.439245
Target:  5'- aCCCUGGGgcuaGGCUGcguGCAGG-CGGCGGCg -3'
miRNA:   3'- gGGGGUCC----CCGGC---UGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 88033 0.74 0.282585
Target:  5'- uUCCUC-GGGGCCGAagcguaCAGGUCAAUacgGGCg -3'
miRNA:   3'- -GGGGGuCCCCGGCU------GUCCAGUUG---CCG- -5'
24534 3' -61.2 NC_005264.1 + 88226 0.71 0.456577
Target:  5'- gCgCCAGGGGgaaCGugGGGUCAggcGCGGg -3'
miRNA:   3'- gGgGGUCCCCg--GCugUCCAGU---UGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.