miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24534 3' -61.2 NC_005264.1 + 161935 0.7 0.498685
Target:  5'- cCCCCCAgcggcccgcgacacGGGGCCGuACAcccaGUCGuacguccgggcGCGGCa -3'
miRNA:   3'- -GGGGGU--------------CCCCGGC-UGUc---CAGU-----------UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 161438 0.71 0.422295
Target:  5'- aCCggCCAGGGGUCGuACGGGaaugCGACGcGCg -3'
miRNA:   3'- gGG--GGUCCCCGGC-UGUCCa---GUUGC-CG- -5'
24534 3' -61.2 NC_005264.1 + 161282 0.67 0.673706
Target:  5'- gUCCggCCGGGGcccgccuauuGCCGGCGcGGUCAACGccGCg -3'
miRNA:   3'- -GGG--GGUCCC----------CGGCUGU-CCAGUUGC--CG- -5'
24534 3' -61.2 NC_005264.1 + 160441 0.69 0.556675
Target:  5'- uUCCUAGGcaGGCCGGCgccgggcuccugcGGG-CGACGGCc -3'
miRNA:   3'- gGGGGUCC--CCGGCUG-------------UCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 159973 0.67 0.692949
Target:  5'- gCCCCGGucgaucgcaGCCGcaGCGGG-CGACGGCg -3'
miRNA:   3'- gGGGGUCcc-------CGGC--UGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 159731 0.66 0.740118
Target:  5'- aCUacgaaGGGGGCCGggaaucgcccgaACGGGUCcuCGGCc -3'
miRNA:   3'- gGGgg---UCCCCGGC------------UGUCCAGuuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 158103 0.8 0.136174
Target:  5'- aCCCCCGGacgccGGCuCGGCGGG-CAGCGGCg -3'
miRNA:   3'- -GGGGGUCc----CCG-GCUGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 157336 0.7 0.501433
Target:  5'- gCCUUCGcGGaGGCCGACgaGGGUUGGCGGg -3'
miRNA:   3'- -GGGGGU-CC-CCGGCUG--UCCAGUUGCCg -5'
24534 3' -61.2 NC_005264.1 + 156125 0.7 0.519915
Target:  5'- cCCgCCCaAGGuGGUgGGCAGGaCGAgGGCg -3'
miRNA:   3'- -GG-GGG-UCC-CCGgCUGUCCaGUUgCCG- -5'
24534 3' -61.2 NC_005264.1 + 154516 0.73 0.336538
Target:  5'- aCCCUAGGGGaCGACGGcGaCGccGCGGCg -3'
miRNA:   3'- gGGGGUCCCCgGCUGUC-CaGU--UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 150567 0.66 0.749329
Target:  5'- gCCgCCAGGGuaCGGCAucGUCAucucagggACGGCc -3'
miRNA:   3'- -GGgGGUCCCcgGCUGUc-CAGU--------UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 149717 0.66 0.73455
Target:  5'- uCCCCUagaagcgcuugcuguAGuGGcGCCGGCGGG-CAGaGGCg -3'
miRNA:   3'- -GGGGG---------------UC-CC-CGGCUGUCCaGUUgCCG- -5'
24534 3' -61.2 NC_005264.1 + 148640 0.7 0.501433
Target:  5'- uCCgCCGu-GGCCGAUGGGgCGACGGCg -3'
miRNA:   3'- -GGgGGUccCCGGCUGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 144312 0.68 0.586417
Target:  5'- gCCCUCAGGGGgaGACGGcGccccCGAuCGGCa -3'
miRNA:   3'- -GGGGGUCCCCggCUGUC-Ca---GUU-GCCG- -5'
24534 3' -61.2 NC_005264.1 + 143639 0.69 0.547169
Target:  5'- aUCCCAaggucguGGGGCCGAC-GGUCGGCcccGGa -3'
miRNA:   3'- gGGGGU-------CCCCGGCUGuCCAGUUG---CCg -5'
24534 3' -61.2 NC_005264.1 + 140665 0.69 0.567185
Target:  5'- gCCUCUAGGGGCUguuguGACGuacGGcCcGCGGCg -3'
miRNA:   3'- -GGGGGUCCCCGG-----CUGU---CCaGuUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 139965 0.71 0.430721
Target:  5'- gCCCgaaCCAGGGGUcuauuuCGAUAGGUUcgcGCGGCc -3'
miRNA:   3'- -GGG---GGUCCCCG------GCUGUCCAGu--UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 138462 0.68 0.633938
Target:  5'- gCCgCCGGGGgaGCCGcgaaGCcGGUCAugccagaGCGGCg -3'
miRNA:   3'- -GGgGGUCCC--CGGC----UGuCCAGU-------UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 133383 0.67 0.683346
Target:  5'- cCCCCCAauccgcguGGGGCCGACc-GagGACuGCu -3'
miRNA:   3'- -GGGGGU--------CCCCGGCUGucCagUUGcCG- -5'
24534 3' -61.2 NC_005264.1 + 132929 0.66 0.749329
Target:  5'- cUCCCUAGc-GCCGACGGGguagCGccgcacgccuucGCGGCa -3'
miRNA:   3'- -GGGGGUCccCGGCUGUCCa---GU------------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.