miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24534 3' -61.2 NC_005264.1 + 132890 0.66 0.758446
Target:  5'- aUCCUAGGaucGGuuGACcggcuAGGcgCAGCGGCg -3'
miRNA:   3'- gGGGGUCC---CCggCUG-----UCCa-GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 3314 0.68 0.586417
Target:  5'- uUCCgaaCGGcGGGCCGACGGG-CAAuacUGGCc -3'
miRNA:   3'- -GGGg--GUC-CCCGGCUGUCCaGUU---GCCG- -5'
24534 3' -61.2 NC_005264.1 + 19271 0.68 0.586417
Target:  5'- gCCCC-GGGGaCGGCAGaGUCGGgGGa -3'
miRNA:   3'- gGGGGuCCCCgGCUGUC-CAGUUgCCg -5'
24534 3' -61.2 NC_005264.1 + 6584 1.13 0.000667
Target:  5'- cCCCCCAGGGGCCGACAGGUCAACGGCg -3'
miRNA:   3'- -GGGGGUCCCCGGCUGUCCAGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 40705 0.66 0.740118
Target:  5'- aCUacgaaGGGGGCCGggaaucgcccgaACGGGUCcuCGGCc -3'
miRNA:   3'- gGGgg---UCCCCGGC------------UGUCCAGuuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 149717 0.66 0.73455
Target:  5'- uCCCCUagaagcgcuugcuguAGuGGcGCCGGCGGG-CAGaGGCg -3'
miRNA:   3'- -GGGGG---------------UC-CC-CGGCUGUCCaGUUgCCG- -5'
24534 3' -61.2 NC_005264.1 + 4067 0.66 0.712008
Target:  5'- uCUCCCGacagcGGGGCUguugcacgGGCGGcGUCG-CGGCa -3'
miRNA:   3'- -GGGGGU-----CCCCGG--------CUGUC-CAGUuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 76009 0.66 0.708214
Target:  5'- cCCCCUAGaagaucugaagucGGCCGACGa--CAGCGGCa -3'
miRNA:   3'- -GGGGGUCc------------CCGGCUGUccaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 78213 0.67 0.683346
Target:  5'- aCCgCCAGGGGCaCGuACGGaG-CAACGcuGCa -3'
miRNA:   3'- -GGgGGUCCCCG-GC-UGUC-CaGUUGC--CG- -5'
24534 3' -61.2 NC_005264.1 + 46425 0.68 0.59608
Target:  5'- gCCCCCAgcgaccugccgcGGGcucagcgagaGCCGACgaagAGGUCucccgcGACGGCa -3'
miRNA:   3'- -GGGGGU------------CCC----------CGGCUG----UCCAG------UUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 5260 0.67 0.661128
Target:  5'- gCgCCGGGaGGCgagucgcggccggaCGGCGGGgCGGCGGCu -3'
miRNA:   3'- gGgGGUCC-CCG--------------GCUGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 6771 0.67 0.692949
Target:  5'- uUCCacaAGGGaGCCaggGAUGGGUgCGGCGGCu -3'
miRNA:   3'- gGGGg--UCCC-CGG---CUGUCCA-GUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 132929 0.66 0.749329
Target:  5'- cUCCCUAGc-GCCGACGGGguagCGccgcacgccuucGCGGCa -3'
miRNA:   3'- -GGGGGUCccCGGCUGUCCa---GU------------UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 95334 0.68 0.633938
Target:  5'- gCCgCCGGGcGCCGcgaaacggacucgGCGGGgCGGCGGCc -3'
miRNA:   3'- -GGgGGUCCcCGGC-------------UGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 150567 0.66 0.749329
Target:  5'- gCCgCCAGGGuaCGGCAucGUCAucucagggACGGCc -3'
miRNA:   3'- -GGgGGUCCCcgGCUGUc-CAGU--------UGCCG- -5'
24534 3' -61.2 NC_005264.1 + 40946 0.67 0.692949
Target:  5'- gCCCCGGucgaucgcaGCCGcaGCGGG-CGACGGCg -3'
miRNA:   3'- gGGGGUCcc-------CGGC--UGUCCaGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 9093 0.68 0.605768
Target:  5'- gCCagCuGGGGCCGAauauGGGUCuuCGGUg -3'
miRNA:   3'- gGGg-GuCCCCGGCUg---UCCAGuuGCCG- -5'
24534 3' -61.2 NC_005264.1 + 144312 0.68 0.586417
Target:  5'- gCCCUCAGGGGgaGACGGcGccccCGAuCGGCa -3'
miRNA:   3'- -GGGGGUCCCCggCUGUC-Ca---GUU-GCCG- -5'
24534 3' -61.2 NC_005264.1 + 63635 0.66 0.740118
Target:  5'- aUCCgAGGGGCUGAgGuuGGacuugaucugcUCAGCGGUg -3'
miRNA:   3'- gGGGgUCCCCGGCUgU--CC-----------AGUUGCCG- -5'
24534 3' -61.2 NC_005264.1 + 118632 0.66 0.72145
Target:  5'- uCCCUCGccGGCCaaguUAGGUCAAUGGUg -3'
miRNA:   3'- -GGGGGUccCCGGcu--GUCCAGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.