miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24534 5' -53.5 NC_005264.1 + 126112 0.66 0.980813
Target:  5'- cGGGcAAGgaAUGCgCgGCGGCUgagccgauggcacuuGCGCGGc -3'
miRNA:   3'- -CCC-UUUaaUACG-GgUGCCGG---------------UGCGCC- -5'
24534 5' -53.5 NC_005264.1 + 129016 0.66 0.980387
Target:  5'- aGGGGAAUagcuacagccuUGCCgGCGaGCCgguccaaagcggcguGCGCGGc -3'
miRNA:   3'- -CCCUUUAau---------ACGGgUGC-CGG---------------UGCGCC- -5'
24534 5' -53.5 NC_005264.1 + 133949 0.66 0.979953
Target:  5'- uGGGAAGcu-UGgCCGgGGUCuuCGCGGu -3'
miRNA:   3'- -CCCUUUaauACgGGUgCCGGu-GCGCC- -5'
24534 5' -53.5 NC_005264.1 + 89096 0.66 0.979953
Target:  5'- -----uUUGUGCCgAUuaGGCCGCgGCGGg -3'
miRNA:   3'- cccuuuAAUACGGgUG--CCGGUG-CGCC- -5'
24534 5' -53.5 NC_005264.1 + 144270 0.66 0.979953
Target:  5'- --------cUGCCUugGGCCG-GCGGa -3'
miRNA:   3'- cccuuuaauACGGGugCCGGUgCGCC- -5'
24534 5' -53.5 NC_005264.1 + 16442 0.66 0.979953
Target:  5'- cGGGGcc---UGCCCGCGGgUgugaACGUGGu -3'
miRNA:   3'- -CCCUuuaauACGGGUGCCgG----UGCGCC- -5'
24534 5' -53.5 NC_005264.1 + 9722 0.66 0.97768
Target:  5'- -uGAGccAUUGUGCCCgccGCGGCaaacUGCGGg -3'
miRNA:   3'- ccCUU--UAAUACGGG---UGCCGgu--GCGCC- -5'
24534 5' -53.5 NC_005264.1 + 116930 0.66 0.97768
Target:  5'- uGGGAGcagauUG-CCGCGGCgGCGCa- -3'
miRNA:   3'- -CCCUUuaau-ACgGGUGCCGgUGCGcc -5'
24534 5' -53.5 NC_005264.1 + 155243 0.66 0.97768
Target:  5'- cGGGGGAUgaggaaGCaucuCCGCaGCgGCGCGGg -3'
miRNA:   3'- -CCCUUUAaua---CG----GGUGcCGgUGCGCC- -5'
24534 5' -53.5 NC_005264.1 + 54856 0.66 0.97768
Target:  5'- uGGGAGccgcccGCauCCACGGUCACGCu- -3'
miRNA:   3'- -CCCUUuaaua-CG--GGUGCCGGUGCGcc -5'
24534 5' -53.5 NC_005264.1 + 128748 0.66 0.97768
Target:  5'- -uGAGccAUUGUGCCCgccGCGGCaaacUGCGGg -3'
miRNA:   3'- ccCUU--UAAUACGGG---UGCCGgu--GCGCC- -5'
24534 5' -53.5 NC_005264.1 + 44775 0.66 0.977443
Target:  5'- -------gGUGCCCGCGGCgAucguugccgacgcCGCGGu -3'
miRNA:   3'- cccuuuaaUACGGGUGCCGgU-------------GCGCC- -5'
24534 5' -53.5 NC_005264.1 + 50491 0.66 0.975222
Target:  5'- aGGAc---GUGgCCACGGCCGCGg-- -3'
miRNA:   3'- cCCUuuaaUACgGGUGCCGGUGCgcc -5'
24534 5' -53.5 NC_005264.1 + 97074 0.66 0.972573
Target:  5'- cGGGAGGUaaaauauaaggGUGCgC-CGGCCGacgGCGGa -3'
miRNA:   3'- -CCCUUUAa----------UACGgGuGCCGGUg--CGCC- -5'
24534 5' -53.5 NC_005264.1 + 29417 0.66 0.972573
Target:  5'- cGGGAAGaacAUGUCCGCguaggcuuuggGGCCACcaaCGGg -3'
miRNA:   3'- -CCCUUUaa-UACGGGUG-----------CCGGUGc--GCC- -5'
24534 5' -53.5 NC_005264.1 + 154775 0.66 0.972573
Target:  5'- -------cGUGCCCgacuGCGGCCgcgACGUGGg -3'
miRNA:   3'- cccuuuaaUACGGG----UGCCGG---UGCGCC- -5'
24534 5' -53.5 NC_005264.1 + 24142 0.66 0.972573
Target:  5'- cGGGAAGUg--GCaaCCGuCGGCCugGUa- -3'
miRNA:   3'- -CCCUUUAauaCG--GGU-GCCGGugCGcc -5'
24534 5' -53.5 NC_005264.1 + 35749 0.66 0.972573
Target:  5'- -------cGUGCCCgacuGCGGCCgcgACGUGGg -3'
miRNA:   3'- cccuuuaaUACGGG----UGCCGG---UGCGCC- -5'
24534 5' -53.5 NC_005264.1 + 148270 0.66 0.972297
Target:  5'- cGGGAcaGAUU-UGCCCgGCGGgagauucuggagaCCGCGCGc -3'
miRNA:   3'- -CCCU--UUAAuACGGG-UGCC-------------GGUGCGCc -5'
24534 5' -53.5 NC_005264.1 + 98085 0.66 0.969725
Target:  5'- ------gUGUGCCC-CGGCCGCccCGGg -3'
miRNA:   3'- cccuuuaAUACGGGuGCCGGUGc-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.