miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24535 3' -56.6 NC_005264.1 + 74277 0.66 0.91464
Target:  5'- cGGGGCcucauaugGCAGCAUuAGCggcggucuggcgcgCGGCauGGCCa -3'
miRNA:   3'- -CCCCGa-------CGUCGUAcUUGa-------------GCCG--CUGG- -5'
24535 3' -56.6 NC_005264.1 + 3674 0.66 0.91231
Target:  5'- uGGGCggccgucucgGCGGCGagacgagGAGgaCGGCGAUCg -3'
miRNA:   3'- cCCCGa---------CGUCGUa------CUUgaGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 122701 0.66 0.91231
Target:  5'- uGGGCggccgucucgGCGGCGagacgagGAGgaCGGCGAUCg -3'
miRNA:   3'- cCCCGa---------CGUCGUa------CUUgaGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 31809 0.66 0.91231
Target:  5'- uGGGCUGUAuaucaauuuuguGCAUGucGCUCucuaguuGCGACCc -3'
miRNA:   3'- cCCCGACGU------------CGUACu-UGAGc------CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 156164 0.66 0.908746
Target:  5'- aGGGCgcauaugcgcggcuuUGCGGCGUGg---CGGCG-CCg -3'
miRNA:   3'- cCCCG---------------ACGUCGUACuugaGCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 158143 0.66 0.906324
Target:  5'- --aGCUGCuGuCGUGGACgCGGCG-CCa -3'
miRNA:   3'- cccCGACGuC-GUACUUGaGCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 152997 0.66 0.906324
Target:  5'- aGGGGCcGCuugacccucuCGcGAACgugCGGCGGCCc -3'
miRNA:   3'- -CCCCGaCGuc--------GUaCUUGa--GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 67182 0.66 0.906324
Target:  5'- uGGcGGcCUGCAGCGcuaUGAcg-CGGCG-CCu -3'
miRNA:   3'- -CC-CC-GACGUCGU---ACUugaGCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 39116 0.66 0.906324
Target:  5'- --aGCUGCuGuCGUGGACgCGGCG-CCa -3'
miRNA:   3'- cccCGACGuC-GUACUUGaGCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 74416 0.66 0.906324
Target:  5'- -uGGCUGCGGgAgcccAugUCGGUGACa -3'
miRNA:   3'- ccCCGACGUCgUac--UugAGCCGCUGg -5'
24535 3' -56.6 NC_005264.1 + 33970 0.66 0.906324
Target:  5'- aGGGGCcGCuugacccucuCGcGAACgugCGGCGGCCc -3'
miRNA:   3'- -CCCCGaCGuc--------GUaCUUGa--GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 139530 0.66 0.906324
Target:  5'- uGGaGCaGCAGCAUGGGCaCGaucGCGGCUu -3'
miRNA:   3'- cCC-CGaCGUCGUACUUGaGC---CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 45032 0.66 0.906324
Target:  5'- -cGGCgGCAGgAUGGA--CGGCGACg -3'
miRNA:   3'- ccCCGaCGUCgUACUUgaGCCGCUGg -5'
24535 3' -56.6 NC_005264.1 + 129522 0.66 0.900109
Target:  5'- cGGaGGCgacggaaccacUGCgGGCGUGGGCUUaGGCGucGCCg -3'
miRNA:   3'- -CC-CCG-----------ACG-UCGUACUUGAG-CCGC--UGG- -5'
24535 3' -56.6 NC_005264.1 + 135056 0.66 0.900109
Target:  5'- uGGGCUuCgAGC-UGG--UCGGCGGCCa -3'
miRNA:   3'- cCCCGAcG-UCGuACUugAGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 148181 0.66 0.900109
Target:  5'- gGGaGGgaGCGG-GUGAGguuaUUGGCGGCCg -3'
miRNA:   3'- -CC-CCgaCGUCgUACUUg---AGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 4282 0.66 0.893666
Target:  5'- cGGGGCgGCGGCAgaGAGCacgUCcuuaucgucccuGGCGuCCa -3'
miRNA:   3'- -CCCCGaCGUCGUa-CUUG---AG------------CCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 79882 0.66 0.893666
Target:  5'- gGGGGCgcgGCGGCGaccguCgcaGGCGACg -3'
miRNA:   3'- -CCCCGa--CGUCGUacuu-Gag-CCGCUGg -5'
24535 3' -56.6 NC_005264.1 + 123309 0.66 0.893666
Target:  5'- cGGGGCgGCGGCAgaGAGCacgUCcuuaucgucccuGGCGuCCa -3'
miRNA:   3'- -CCCCGaCGUCGUa-CUUG---AG------------CCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 145998 0.66 0.893666
Target:  5'- aGGGCcucuacggcgUGCGcGuUAUGGGCUCGgGCGACUc -3'
miRNA:   3'- cCCCG----------ACGU-C-GUACUUGAGC-CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.