miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24535 3' -56.6 NC_005264.1 + 31809 0.66 0.91231
Target:  5'- uGGGCUGUAuaucaauuuuguGCAUGucGCUCucuaguuGCGACCc -3'
miRNA:   3'- cCCCGACGU------------CGUACu-UGAGc------CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 158143 0.66 0.906324
Target:  5'- --aGCUGCuGuCGUGGACgCGGCG-CCa -3'
miRNA:   3'- cccCGACGuC-GUACUUGaGCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 67182 0.66 0.906324
Target:  5'- uGGcGGcCUGCAGCGcuaUGAcg-CGGCG-CCu -3'
miRNA:   3'- -CC-CC-GACGUCGU---ACUugaGCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 145998 0.66 0.893666
Target:  5'- aGGGCcucuacggcgUGCGcGuUAUGGGCUCGgGCGACUc -3'
miRNA:   3'- cCCCG----------ACGU-C-GUACUUGAGC-CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 88969 0.66 0.880114
Target:  5'- -cGGC-GaCGGCgGUGAGCUCaGUGACCg -3'
miRNA:   3'- ccCCGaC-GUCG-UACUUGAGcCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 128126 0.66 0.887
Target:  5'- uGGGGCcGaa-UAUGggUcuUCGGUGACCg -3'
miRNA:   3'- -CCCCGaCgucGUACuuG--AGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 156164 0.66 0.908746
Target:  5'- aGGGCgcauaugcgcggcuuUGCGGCGUGg---CGGCG-CCg -3'
miRNA:   3'- cCCCG---------------ACGUCGUACuugaGCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 39116 0.66 0.906324
Target:  5'- --aGCUGCuGuCGUGGACgCGGCG-CCa -3'
miRNA:   3'- cccCGACGuC-GUACUUGaGCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 74277 0.66 0.91464
Target:  5'- cGGGGCcucauaugGCAGCAUuAGCggcggucuggcgcgCGGCauGGCCa -3'
miRNA:   3'- -CCCCGa-------CGUCGUAcUUGa-------------GCCG--CUGG- -5'
24535 3' -56.6 NC_005264.1 + 152997 0.66 0.906324
Target:  5'- aGGGGCcGCuugacccucuCGcGAACgugCGGCGGCCc -3'
miRNA:   3'- -CCCCGaCGuc--------GUaCUUGa--GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 148181 0.66 0.900109
Target:  5'- gGGaGGgaGCGG-GUGAGguuaUUGGCGGCCg -3'
miRNA:   3'- -CC-CCgaCGUCgUACUUg---AGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 123309 0.66 0.893666
Target:  5'- cGGGGCgGCGGCAgaGAGCacgUCcuuaucgucccuGGCGuCCa -3'
miRNA:   3'- -CCCCGaCGUCGUa-CUUG---AG------------CCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 3674 0.66 0.91231
Target:  5'- uGGGCggccgucucgGCGGCGagacgagGAGgaCGGCGAUCg -3'
miRNA:   3'- cCCCGa---------CGUCGUa------CUUgaGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 83714 0.66 0.880114
Target:  5'- cGGuGGCgGCGGCuagGuACgCGGCGGCa -3'
miRNA:   3'- -CC-CCGaCGUCGua-CuUGaGCCGCUGg -5'
24535 3' -56.6 NC_005264.1 + 75216 0.66 0.880114
Target:  5'- -cGGCUGCAuCGgcccuGCgCGGCGGCCg -3'
miRNA:   3'- ccCCGACGUcGUacu--UGaGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 42263 0.66 0.887
Target:  5'- -uGGCUGUAGCAUGAGCUgaugaGGguuucgauuuCGGCUu -3'
miRNA:   3'- ccCCGACGUCGUACUUGAg----CC----------GCUGG- -5'
24535 3' -56.6 NC_005264.1 + 162725 0.66 0.880114
Target:  5'- cGGGgaGCGGgAaaagGaAACUCGaGCGGCCc -3'
miRNA:   3'- cCCCgaCGUCgUa---C-UUGAGC-CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 33970 0.66 0.906324
Target:  5'- aGGGGCcGCuugacccucuCGcGAACgugCGGCGGCCc -3'
miRNA:   3'- -CCCCGaCGuc--------GUaCUUGa--GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 122701 0.66 0.91231
Target:  5'- uGGGCggccgucucgGCGGCGagacgagGAGgaCGGCGAUCg -3'
miRNA:   3'- cCCCGa---------CGUCGUa------CUUgaGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 123521 0.66 0.880114
Target:  5'- aGGGUcGCgAGCGgaggggGGACUgGGCGuCCg -3'
miRNA:   3'- cCCCGaCG-UCGUa-----CUUGAgCCGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.