miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24535 3' -56.6 NC_005264.1 + 9099 0.66 0.887
Target:  5'- uGGGGCcGaa-UAUGggUcuUCGGUGACCg -3'
miRNA:   3'- -CCCCGaCgucGUACuuG--AGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 128126 0.66 0.887
Target:  5'- uGGGGCcGaa-UAUGggUcuUCGGUGACCg -3'
miRNA:   3'- -CCCCGaCgucGUACuuG--AGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 42263 0.66 0.887
Target:  5'- -uGGCUGUAGCAUGAGCUgaugaGGguuucgauuuCGGCUu -3'
miRNA:   3'- ccCCGACGUCGUACUUGAg----CC----------GCUGG- -5'
24535 3' -56.6 NC_005264.1 + 43699 0.66 0.880114
Target:  5'- cGGGgaGCGGgAaaagGaAACUCGaGCGGCCc -3'
miRNA:   3'- cCCCgaCGUCgUa---C-UUGAGC-CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 148171 0.66 0.880114
Target:  5'- uGGGCcccgGCAGCAUGGuCUCuGCcguuGCCg -3'
miRNA:   3'- cCCCGa---CGUCGUACUuGAGcCGc---UGG- -5'
24535 3' -56.6 NC_005264.1 + 102751 0.66 0.880114
Target:  5'- uGGGCcgccgGCAGUAggcuagGGGCgggccaguUCGGUGGCCu -3'
miRNA:   3'- cCCCGa----CGUCGUa-----CUUG--------AGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 4494 0.66 0.880114
Target:  5'- aGGGUcGCgAGCGgaggggGGACUgGGCGuCCg -3'
miRNA:   3'- cCCCGaCG-UCGUa-----CUUGAgCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 75216 0.66 0.880114
Target:  5'- -cGGCUGCAuCGgcccuGCgCGGCGGCCg -3'
miRNA:   3'- ccCCGACGUcGUacu--UGaGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 162725 0.66 0.880114
Target:  5'- cGGGgaGCGGgAaaagGaAACUCGaGCGGCCc -3'
miRNA:   3'- cCCCgaCGUCgUa---C-UUGAGC-CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 123521 0.66 0.880114
Target:  5'- aGGGUcGCgAGCGgaggggGGACUgGGCGuCCg -3'
miRNA:   3'- cCCCGaCG-UCGUa-----CUUGAgCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 88969 0.66 0.880114
Target:  5'- -cGGC-GaCGGCgGUGAGCUCaGUGACCg -3'
miRNA:   3'- ccCCGaC-GUCG-UACUUGAGcCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 83714 0.66 0.880114
Target:  5'- cGGuGGCgGCGGCuagGuACgCGGCGGCa -3'
miRNA:   3'- -CC-CCGaCGUCGua-CuUGaGCCGCUGg -5'
24535 3' -56.6 NC_005264.1 + 125573 0.67 0.873012
Target:  5'- gGGGGCUuCGGCAgGAGCgccucguccaCGGUGAUg -3'
miRNA:   3'- -CCCCGAcGUCGUaCUUGa---------GCCGCUGg -5'
24535 3' -56.6 NC_005264.1 + 6546 0.67 0.873012
Target:  5'- gGGGGCUuCGGCAgGAGCgccucguccaCGGUGAUg -3'
miRNA:   3'- -CCCCGAcGUCGUaCUUGa---------GCCGCUGg -5'
24535 3' -56.6 NC_005264.1 + 31860 0.67 0.865699
Target:  5'- uGGGC-GCgaccucgucaGGCAagUGGACUuucaccccagCGGCGACCg -3'
miRNA:   3'- cCCCGaCG----------UCGU--ACUUGA----------GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 16442 0.67 0.865699
Target:  5'- cGGGGcCUGCccgcgGGUGUGAACgUGGuCGAaCCa -3'
miRNA:   3'- -CCCC-GACG-----UCGUACUUGaGCC-GCU-GG- -5'
24535 3' -56.6 NC_005264.1 + 117423 0.67 0.865699
Target:  5'- cGGGGCUGUcGCGgcgcGCagGGCG-CCg -3'
miRNA:   3'- -CCCCGACGuCGUacu-UGagCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 150886 0.67 0.865699
Target:  5'- uGGGC-GCgaccucgucaGGCAagUGGACUuucaccccagCGGCGACCg -3'
miRNA:   3'- cCCCGaCG----------UCGU--ACUUGA----------GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 71311 0.67 0.858181
Target:  5'- --uGC-GCgAGCAUGAACUUGGCGAgUg -3'
miRNA:   3'- cccCGaCG-UCGUACUUGAGCCGCUgG- -5'
24535 3' -56.6 NC_005264.1 + 61375 0.67 0.858181
Target:  5'- uGGGGCggugauuaUGguGC-UGAACUuUGGCGugUc -3'
miRNA:   3'- -CCCCG--------ACguCGuACUUGA-GCCGCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.