Results 41 - 60 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24535 | 3' | -56.6 | NC_005264.1 | + | 61375 | 0.67 | 0.858181 |
Target: 5'- uGGGGCggugauuaUGguGC-UGAACUuUGGCGugUc -3' miRNA: 3'- -CCCCG--------ACguCGuACUUGA-GCCGCugG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 120124 | 0.67 | 0.856653 |
Target: 5'- uGGGGC-GCAGCGagcaggaggacgGAGCgccggcCGGCGAUg -3' miRNA: 3'- -CCCCGaCGUCGUa-----------CUUGa-----GCCGCUGg -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 17832 | 0.67 | 0.853574 |
Target: 5'- gGGGGCUagauccuccaucucGCGcgcgcuguucgaccGCGUGAGCaaUCGGCGGgCu -3' miRNA: 3'- -CCCCGA--------------CGU--------------CGUACUUG--AGCCGCUgG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 30420 | 0.67 | 0.850463 |
Target: 5'- cGGaGaGCUGCGGCGgagGAGguCUCGGgGgaGCCg -3' miRNA: 3'- -CC-C-CGACGUCGUa--CUU--GAGCCgC--UGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 149447 | 0.67 | 0.850463 |
Target: 5'- cGGaGaGCUGCGGCGgagGAGguCUCGGgGgaGCCg -3' miRNA: 3'- -CC-C-CGACGUCGUa--CUU--GAGCCgC--UGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 45466 | 0.67 | 0.850463 |
Target: 5'- aGGGCcGCG--AUGAACUUGGCGcACUc -3' miRNA: 3'- cCCCGaCGUcgUACUUGAGCCGC-UGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 121326 | 0.67 | 0.842551 |
Target: 5'- uGGGGCUGCucccGCAccuuaaggaGGAgUUGGCGAgCu -3' miRNA: 3'- -CCCCGACGu---CGUa--------CUUgAGCCGCUgG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 123782 | 0.67 | 0.842551 |
Target: 5'- gGGGGUggaccGCcGCGcGAACUCGGCcaguCCg -3' miRNA: 3'- -CCCCGa----CGuCGUaCUUGAGCCGcu--GG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 4756 | 0.67 | 0.842551 |
Target: 5'- gGGGGUggaccGCcGCGcGAACUCGGCcaguCCg -3' miRNA: 3'- -CCCCGa----CGuCGUaCUUGAGCCGcu--GG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 112497 | 0.68 | 0.834453 |
Target: 5'- aGGGCUGCcGCA-GGACaaGGuCGACg -3' miRNA: 3'- cCCCGACGuCGUaCUUGagCC-GCUGg -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 66604 | 0.68 | 0.834453 |
Target: 5'- uGGGCUGCGccGCGUu-GC-CGGCG-CCg -3' miRNA: 3'- cCCCGACGU--CGUAcuUGaGCCGCuGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 33289 | 0.68 | 0.826175 |
Target: 5'- aGGGCgGCGccGCAcagGAcccGCUCGGCGAguaCCg -3' miRNA: 3'- cCCCGaCGU--CGUa--CU---UGAGCCGCU---GG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 150797 | 0.68 | 0.826175 |
Target: 5'- gGGGGCgUGUggGGCAgGAGCgCaGCGACUg -3' miRNA: 3'- -CCCCG-ACG--UCGUaCUUGaGcCGCUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 155457 | 0.68 | 0.826175 |
Target: 5'- cGGGGCcGCGaucGaagaaAUGAAaaccgCGGCGGCCg -3' miRNA: 3'- -CCCCGaCGU---Cg----UACUUga---GCCGCUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 152316 | 0.68 | 0.826175 |
Target: 5'- aGGGCgGCGccGCAcagGAcccGCUCGGCGAguaCCg -3' miRNA: 3'- cCCCGaCGU--CGUa--CU---UGAGCCGCU---GG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 56919 | 0.68 | 0.826175 |
Target: 5'- uGGGGCgGCGuacguGCGUGGcgcACggGGCGACg -3' miRNA: 3'- -CCCCGaCGU-----CGUACU---UGagCCGCUGg -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 21745 | 0.68 | 0.825337 |
Target: 5'- uGGGGCcuucgGCGGCGgccgucuUGAGCgccguaacuUUGGCGGCa -3' miRNA: 3'- -CCCCGa----CGUCGU-------ACUUG---------AGCCGCUGg -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 3766 | 0.68 | 0.817724 |
Target: 5'- cGGGGC-GCuGCggGccCUUGGuCGACCg -3' miRNA: 3'- -CCCCGaCGuCGuaCuuGAGCC-GCUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 122792 | 0.68 | 0.817724 |
Target: 5'- cGGGGC-GCuGCggGccCUUGGuCGACCg -3' miRNA: 3'- -CCCCGaCGuCGuaCuuGAGCC-GCUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 121912 | 0.68 | 0.817724 |
Target: 5'- cGGGGCgcggcGCGGCGgggaGGGCgaCGGCGAg- -3' miRNA: 3'- -CCCCGa----CGUCGUa---CUUGa-GCCGCUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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