miRNA display CGI


Results 21 - 40 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24535 3' -56.6 NC_005264.1 + 20255 0.73 0.515975
Target:  5'- aGGGGUUGCGGCGcGGcCUCgcggaGGgGACCg -3'
miRNA:   3'- -CCCCGACGUCGUaCUuGAG-----CCgCUGG- -5'
24535 3' -56.6 NC_005264.1 + 21566 0.75 0.423701
Target:  5'- gGGGGUUGgggcaGGCAUGcuaguACcgUCGGCGACCg -3'
miRNA:   3'- -CCCCGACg----UCGUACu----UG--AGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 21745 0.68 0.825337
Target:  5'- uGGGGCcuucgGCGGCGgccgucuUGAGCgccguaacuUUGGCGGCa -3'
miRNA:   3'- -CCCCGa----CGUCGU-------ACUUG---------AGCCGCUGg -5'
24535 3' -56.6 NC_005264.1 + 25719 0.71 0.675923
Target:  5'- cGGGCgGCAGCgGUGcguACUCGGUcgcggagaGGCCa -3'
miRNA:   3'- cCCCGaCGUCG-UACu--UGAGCCG--------CUGG- -5'
24535 3' -56.6 NC_005264.1 + 25926 0.69 0.773161
Target:  5'- gGGGcGCUGUAGC--GGACgaGGCGACg -3'
miRNA:   3'- -CCC-CGACGUCGuaCUUGagCCGCUGg -5'
24535 3' -56.6 NC_005264.1 + 30117 0.72 0.595141
Target:  5'- cGGGCggcGCGGCAccGAGCUgCGGCGcauugGCCg -3'
miRNA:   3'- cCCCGa--CGUCGUa-CUUGA-GCCGC-----UGG- -5'
24535 3' -56.6 NC_005264.1 + 30420 0.67 0.850463
Target:  5'- cGGaGaGCUGCGGCGgagGAGguCUCGGgGgaGCCg -3'
miRNA:   3'- -CC-C-CGACGUCGUa--CUU--GAGCCgC--UGG- -5'
24535 3' -56.6 NC_005264.1 + 31809 0.66 0.91231
Target:  5'- uGGGCUGUAuaucaauuuuguGCAUGucGCUCucuaguuGCGACCc -3'
miRNA:   3'- cCCCGACGU------------CGUACu-UGAGc------CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 31860 0.67 0.865699
Target:  5'- uGGGC-GCgaccucgucaGGCAagUGGACUuucaccccagCGGCGACCg -3'
miRNA:   3'- cCCCGaCG----------UCGU--ACUUGA----------GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 32365 0.79 0.247845
Target:  5'- cGGGGCUGUucuGGCGaGGAUgcCGGCGGCCg -3'
miRNA:   3'- -CCCCGACG---UCGUaCUUGa-GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 33289 0.68 0.826175
Target:  5'- aGGGCgGCGccGCAcagGAcccGCUCGGCGAguaCCg -3'
miRNA:   3'- cCCCGaCGU--CGUa--CU---UGAGCCGCU---GG- -5'
24535 3' -56.6 NC_005264.1 + 33820 0.72 0.585086
Target:  5'- cGGGGCUcGUcgagGGCucguUGGGCUCGGCaucGCCg -3'
miRNA:   3'- -CCCCGA-CG----UCGu---ACUUGAGCCGc--UGG- -5'
24535 3' -56.6 NC_005264.1 + 33970 0.66 0.906324
Target:  5'- aGGGGCcGCuugacccucuCGcGAACgugCGGCGGCCc -3'
miRNA:   3'- -CCCCGaCGuc--------GUaCUUGa--GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 39116 0.66 0.906324
Target:  5'- --aGCUGCuGuCGUGGACgCGGCG-CCa -3'
miRNA:   3'- cccCGACGuC-GUACUUGaGCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 42263 0.66 0.887
Target:  5'- -uGGCUGUAGCAUGAGCUgaugaGGguuucgauuuCGGCUu -3'
miRNA:   3'- ccCCGACGUCGUACUUGAg----CC----------GCUGG- -5'
24535 3' -56.6 NC_005264.1 + 43222 0.69 0.782354
Target:  5'- gGGGGCUaCGGCG-GGGCU-GGCGGgCg -3'
miRNA:   3'- -CCCCGAcGUCGUaCUUGAgCCGCUgG- -5'
24535 3' -56.6 NC_005264.1 + 43699 0.66 0.880114
Target:  5'- cGGGgaGCGGgAaaagGaAACUCGaGCGGCCc -3'
miRNA:   3'- cCCCgaCGUCgUa---C-UUGAGC-CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 45032 0.66 0.906324
Target:  5'- -cGGCgGCAGgAUGGA--CGGCGACg -3'
miRNA:   3'- ccCCGaCGUCgUACUUgaGCCGCUGg -5'
24535 3' -56.6 NC_005264.1 + 45466 0.67 0.850463
Target:  5'- aGGGCcGCG--AUGAACUUGGCGcACUc -3'
miRNA:   3'- cCCCGaCGUcgUACUUGAGCCGC-UGG- -5'
24535 3' -56.6 NC_005264.1 + 48065 0.71 0.675923
Target:  5'- cGGGGCUGCuguuuucauAGCGcaauACUCG-CGGCCg -3'
miRNA:   3'- -CCCCGACG---------UCGUacu-UGAGCcGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.