miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24535 3' -56.6 NC_005264.1 + 162725 0.66 0.880114
Target:  5'- cGGGgaGCGGgAaaagGaAACUCGaGCGGCCc -3'
miRNA:   3'- cCCCgaCGUCgUa---C-UUGAGC-CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 162249 0.69 0.782354
Target:  5'- gGGGGCUaCGGCG-GGGCU-GGCGGgCg -3'
miRNA:   3'- -CCCCGAcGUCGUaCUUGAgCCGCUgG- -5'
24535 3' -56.6 NC_005264.1 + 158143 0.66 0.906324
Target:  5'- --aGCUGCuGuCGUGGACgCGGCG-CCa -3'
miRNA:   3'- cccCGACGuC-GUACUUGaGCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 156164 0.66 0.908746
Target:  5'- aGGGCgcauaugcgcggcuuUGCGGCGUGg---CGGCG-CCg -3'
miRNA:   3'- cCCCG---------------ACGUCGUACuugaGCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 155457 0.68 0.826175
Target:  5'- cGGGGCcGCGaucGaagaaAUGAAaaccgCGGCGGCCg -3'
miRNA:   3'- -CCCCGaCGU---Cg----UACUUga---GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 152997 0.66 0.906324
Target:  5'- aGGGGCcGCuugacccucuCGcGAACgugCGGCGGCCc -3'
miRNA:   3'- -CCCCGaCGuc--------GUaCUUGa--GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 152846 0.72 0.585086
Target:  5'- cGGGGCUcGUcgagGGCucguUGGGCUCGGCaucGCCg -3'
miRNA:   3'- -CCCCGA-CG----UCGu---ACUUGAGCCGc--UGG- -5'
24535 3' -56.6 NC_005264.1 + 152785 0.75 0.441386
Target:  5'- -cGGCUGCAGUuaugAUGGGCUCgcacagcccaGGUGACCg -3'
miRNA:   3'- ccCCGACGUCG----UACUUGAG----------CCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 152316 0.68 0.826175
Target:  5'- aGGGCgGCGccGCAcagGAcccGCUCGGCGAguaCCg -3'
miRNA:   3'- cCCCGaCGU--CGUa--CU---UGAGCCGCU---GG- -5'
24535 3' -56.6 NC_005264.1 + 151392 0.79 0.247845
Target:  5'- cGGGGCUGUucuGGCGaGGAUgcCGGCGGCCg -3'
miRNA:   3'- -CCCCGACG---UCGUaCUUGa-GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 150886 0.67 0.865699
Target:  5'- uGGGC-GCgaccucgucaGGCAagUGGACUuucaccccagCGGCGACCg -3'
miRNA:   3'- cCCCGaCG----------UCGU--ACUUGA----------GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 150797 0.68 0.826175
Target:  5'- gGGGGCgUGUggGGCAgGAGCgCaGCGACUg -3'
miRNA:   3'- -CCCCG-ACG--UCGUaCUUGaGcCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 149447 0.67 0.850463
Target:  5'- cGGaGaGCUGCGGCGgagGAGguCUCGGgGgaGCCg -3'
miRNA:   3'- -CC-C-CGACGUCGUa--CUU--GAGCCgC--UGG- -5'
24535 3' -56.6 NC_005264.1 + 148181 0.66 0.900109
Target:  5'- gGGaGGgaGCGG-GUGAGguuaUUGGCGGCCg -3'
miRNA:   3'- -CC-CCgaCGUCgUACUUg---AGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 148171 0.66 0.880114
Target:  5'- uGGGCcccgGCAGCAUGGuCUCuGCcguuGCCg -3'
miRNA:   3'- cCCCGa---CGUCGUACUuGAGcCGc---UGG- -5'
24535 3' -56.6 NC_005264.1 + 145998 0.66 0.893666
Target:  5'- aGGGCcucuacggcgUGCGcGuUAUGGGCUCGgGCGACUc -3'
miRNA:   3'- cCCCG----------ACGU-C-GUACUUGAGC-CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 139530 0.66 0.906324
Target:  5'- uGGaGCaGCAGCAUGGGCaCGaucGCGGCUu -3'
miRNA:   3'- cCC-CGaCGUCGUACUUGaGC---CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 139115 0.69 0.782354
Target:  5'- uGGGGCgaacacgGCAGCA-GAuugUUCGuGUGGCCc -3'
miRNA:   3'- -CCCCGa------CGUCGUaCUu--GAGC-CGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 139106 0.71 0.625437
Target:  5'- -cGGCUGCuGC-UGAGCggCGGCGugUg -3'
miRNA:   3'- ccCCGACGuCGuACUUGa-GCCGCugG- -5'
24535 3' -56.6 NC_005264.1 + 138205 0.69 0.754414
Target:  5'- uGGGGauuaAGCAUGcGCUgcgCGGUGACCa -3'
miRNA:   3'- -CCCCgacgUCGUACuUGA---GCCGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.