miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24535 3' -56.6 NC_005264.1 + 25719 0.71 0.675923
Target:  5'- cGGGCgGCAGCgGUGcguACUCGGUcgcggagaGGCCa -3'
miRNA:   3'- cCCCGaCGUCG-UACu--UGAGCCG--------CUGG- -5'
24535 3' -56.6 NC_005264.1 + 68518 0.72 0.586091
Target:  5'- uGGGGUaccuUGCGGUAggcaggcuuUGucucggggucgaaauACUCGGCGACCa -3'
miRNA:   3'- -CCCCG----ACGUCGU---------ACu--------------UGAGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 30117 0.72 0.595141
Target:  5'- cGGGCggcGCGGCAccGAGCUgCGGCGcauugGCCg -3'
miRNA:   3'- cCCCGa--CGUCGUa-CUUGA-GCCGC-----UGG- -5'
24535 3' -56.6 NC_005264.1 + 86850 0.72 0.595141
Target:  5'- gGGGGCgccagcuaGCGGCGUGuggggcaauGCUuuccucacaggCGGCGGCCg -3'
miRNA:   3'- -CCCCGa-------CGUCGUACu--------UGA-----------GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 68417 0.72 0.595141
Target:  5'- cGGGCUGCucGCucUGGACUacCGGCG-CCg -3'
miRNA:   3'- cCCCGACGu-CGu-ACUUGA--GCCGCuGG- -5'
24535 3' -56.6 NC_005264.1 + 1574 0.71 0.635555
Target:  5'- uGGGGCUGCAGg--GAccuCUCGGUGGg- -3'
miRNA:   3'- -CCCCGACGUCguaCUu--GAGCCGCUgg -5'
24535 3' -56.6 NC_005264.1 + 79213 0.71 0.635555
Target:  5'- uGGGGCUagGCuGCGUGcaggCGGCGGCg -3'
miRNA:   3'- -CCCCGA--CGuCGUACuugaGCCGCUGg -5'
24535 3' -56.6 NC_005264.1 + 132369 0.71 0.645671
Target:  5'- aGGGGC-GCgAGgAUGAACgUCGG-GGCCg -3'
miRNA:   3'- -CCCCGaCG-UCgUACUUG-AGCCgCUGG- -5'
24535 3' -56.6 NC_005264.1 + 66992 0.71 0.664855
Target:  5'- uGGGCgagcaacggcgagUGCuGCcUGGACggagCGGCGGCCu -3'
miRNA:   3'- cCCCG-------------ACGuCGuACUUGa---GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 152846 0.72 0.585086
Target:  5'- cGGGGCUcGUcgagGGCucguUGGGCUCGGCaucGCCg -3'
miRNA:   3'- -CCCCGA-CG----UCGu---ACUUGAGCCGc--UGG- -5'
24535 3' -56.6 NC_005264.1 + 124440 0.72 0.585086
Target:  5'- aGGGCguacGCGGCAUcuguCUCGGCGucGCCg -3'
miRNA:   3'- cCCCGa---CGUCGUAcuu-GAGCCGC--UGG- -5'
24535 3' -56.6 NC_005264.1 + 124316 0.72 0.565083
Target:  5'- cGGGGCgGCGGCugacccgugGGGCg-GGCGACUg -3'
miRNA:   3'- -CCCCGaCGUCGua-------CUUGagCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 116548 0.84 0.136867
Target:  5'- gGGGGCUacggagGCGGCGUcGAugcgcaGCUCGGCGACCc -3'
miRNA:   3'- -CCCCGA------CGUCGUA-CU------UGAGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 91889 0.8 0.225192
Target:  5'- cGGGGUgguuggccgcgGCAGCgAUGGGCgggcgCGGCGACCa -3'
miRNA:   3'- -CCCCGa----------CGUCG-UACUUGa----GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 151392 0.79 0.247845
Target:  5'- cGGGGCUGUucuGGCGaGGAUgcCGGCGGCCg -3'
miRNA:   3'- -CCCCGACG---UCGUaCUUGa-GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 55177 0.77 0.327123
Target:  5'- uGGGC-GCGGC-UGAAggCGGCGACCg -3'
miRNA:   3'- cCCCGaCGUCGuACUUgaGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 88816 0.75 0.441386
Target:  5'- uGGGCgUGCAGa--GAuucucuCUCGGCGACCg -3'
miRNA:   3'- cCCCG-ACGUCguaCUu-----GAGCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 93059 0.75 0.441386
Target:  5'- aGGGCUGUcugcuGCGggagGGGCcgCGGCGACCu -3'
miRNA:   3'- cCCCGACGu----CGUa---CUUGa-GCCGCUGG- -5'
24535 3' -56.6 NC_005264.1 + 20255 0.73 0.515975
Target:  5'- aGGGGUUGCGGCGcGGcCUCgcggaGGgGACCg -3'
miRNA:   3'- -CCCCGACGUCGUaCUuGAG-----CCgCUGG- -5'
24535 3' -56.6 NC_005264.1 + 16577 0.73 0.515975
Target:  5'- cGGGGCgGCGGCGcacaUG-ACUCcGGcCGACCc -3'
miRNA:   3'- -CCCCGaCGUCGU----ACuUGAG-CC-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.