Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24535 | 3' | -56.6 | NC_005264.1 | + | 74277 | 0.66 | 0.91464 |
Target: 5'- cGGGGCcucauaugGCAGCAUuAGCggcggucuggcgcgCGGCauGGCCa -3' miRNA: 3'- -CCCCGa-------CGUCGUAcUUGa-------------GCCG--CUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 6546 | 0.67 | 0.873012 |
Target: 5'- gGGGGCUuCGGCAgGAGCgccucguccaCGGUGAUg -3' miRNA: 3'- -CCCCGAcGUCGUaCUUGa---------GCCGCUGg -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 61375 | 0.67 | 0.858181 |
Target: 5'- uGGGGCggugauuaUGguGC-UGAACUuUGGCGugUc -3' miRNA: 3'- -CCCCG--------ACguCGuACUUGA-GCCGCugG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 6360 | 1.15 | 0.001194 |
Target: 5'- aGGGGCUGCAGCAUGAACUCGGCGACCa -3' miRNA: 3'- -CCCCGACGUCGUACUUGAGCCGCUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 39116 | 0.66 | 0.906324 |
Target: 5'- --aGCUGCuGuCGUGGACgCGGCG-CCa -3' miRNA: 3'- cccCGACGuC-GUACUUGaGCCGCuGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 139530 | 0.66 | 0.906324 |
Target: 5'- uGGaGCaGCAGCAUGGGCaCGaucGCGGCUu -3' miRNA: 3'- cCC-CGaCGUCGUACUUGaGC---CGCUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 45032 | 0.66 | 0.906324 |
Target: 5'- -cGGCgGCAGgAUGGA--CGGCGACg -3' miRNA: 3'- ccCCGaCGUCgUACUUgaGCCGCUGg -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 129522 | 0.66 | 0.900109 |
Target: 5'- cGGaGGCgacggaaccacUGCgGGCGUGGGCUUaGGCGucGCCg -3' miRNA: 3'- -CC-CCG-----------ACG-UCGUACUUGAG-CCGC--UGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 79882 | 0.66 | 0.893666 |
Target: 5'- gGGGGCgcgGCGGCGaccguCgcaGGCGACg -3' miRNA: 3'- -CCCCGa--CGUCGUacuu-Gag-CCGCUGg -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 4494 | 0.66 | 0.880114 |
Target: 5'- aGGGUcGCgAGCGgaggggGGACUgGGCGuCCg -3' miRNA: 3'- cCCCGaCG-UCGUa-----CUUGAgCCGCuGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 43699 | 0.66 | 0.880114 |
Target: 5'- cGGGgaGCGGgAaaagGaAACUCGaGCGGCCc -3' miRNA: 3'- cCCCgaCGUCgUa---C-UUGAGC-CGCUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 4282 | 0.66 | 0.893666 |
Target: 5'- cGGGGCgGCGGCAgaGAGCacgUCcuuaucgucccuGGCGuCCa -3' miRNA: 3'- -CCCCGaCGUCGUa-CUUG---AG------------CCGCuGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 3674 | 0.66 | 0.91231 |
Target: 5'- uGGGCggccgucucgGCGGCGagacgagGAGgaCGGCGAUCg -3' miRNA: 3'- cCCCGa---------CGUCGUa------CUUgaGCCGCUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 148171 | 0.66 | 0.880114 |
Target: 5'- uGGGCcccgGCAGCAUGGuCUCuGCcguuGCCg -3' miRNA: 3'- cCCCGa---CGUCGUACUuGAGcCGc---UGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 156164 | 0.66 | 0.908746 |
Target: 5'- aGGGCgcauaugcgcggcuuUGCGGCGUGg---CGGCG-CCg -3' miRNA: 3'- cCCCG---------------ACGUCGUACuugaGCCGCuGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 135056 | 0.66 | 0.900109 |
Target: 5'- uGGGCUuCgAGC-UGG--UCGGCGGCCa -3' miRNA: 3'- cCCCGAcG-UCGuACUugAGCCGCUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 102751 | 0.66 | 0.880114 |
Target: 5'- uGGGCcgccgGCAGUAggcuagGGGCgggccaguUCGGUGGCCu -3' miRNA: 3'- cCCCGa----CGUCGUa-----CUUG--------AGCCGCUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 31860 | 0.67 | 0.865699 |
Target: 5'- uGGGC-GCgaccucgucaGGCAagUGGACUuucaccccagCGGCGACCg -3' miRNA: 3'- cCCCGaCG----------UCGU--ACUUGA----------GCCGCUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 33970 | 0.66 | 0.906324 |
Target: 5'- aGGGGCcGCuugacccucuCGcGAACgugCGGCGGCCc -3' miRNA: 3'- -CCCCGaCGuc--------GUaCUUGa--GCCGCUGG- -5' |
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24535 | 3' | -56.6 | NC_005264.1 | + | 74416 | 0.66 | 0.906324 |
Target: 5'- -uGGCUGCGGgAgcccAugUCGGUGACa -3' miRNA: 3'- ccCCGACGUCgUac--UugAGCCGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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