miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24536 3' -57.3 NC_005264.1 + 79386 0.66 0.890466
Target:  5'- aUCAUCGGGACGAuuuuuGGCGCcaugcuaaucGCCCa-- -3'
miRNA:   3'- -AGUGGCCCUGCU-----CCGUGca--------UGGGaag -5'
24536 3' -57.3 NC_005264.1 + 133479 0.66 0.890466
Target:  5'- cUCAUC-GGACGAaGCcgGCGUACCCggCa -3'
miRNA:   3'- -AGUGGcCCUGCUcCG--UGCAUGGGaaG- -5'
24536 3' -57.3 NC_005264.1 + 93492 0.66 0.876791
Target:  5'- gCGCUGcuGGCGGccGGCGCGUcguuCCCUUCg -3'
miRNA:   3'- aGUGGCc-CUGCU--CCGUGCAu---GGGAAG- -5'
24536 3' -57.3 NC_005264.1 + 21348 0.66 0.876791
Target:  5'- gCGCCGGGGCcggauGAGGC-UGUAgCCg-- -3'
miRNA:   3'- aGUGGCCCUG-----CUCCGuGCAUgGGaag -5'
24536 3' -57.3 NC_005264.1 + 19427 0.66 0.873954
Target:  5'- gCGCCGGGuguggccGCGGGGCGCGgguggguuucucuccCCCaUCc -3'
miRNA:   3'- aGUGGCCC-------UGCUCCGUGCau-------------GGGaAG- -5'
24536 3' -57.3 NC_005264.1 + 109105 0.66 0.869636
Target:  5'- gCGCCGGaGACG-GGCACGacgagacggACUCgUUCg -3'
miRNA:   3'- aGUGGCC-CUGCuCCGUGCa--------UGGG-AAG- -5'
24536 3' -57.3 NC_005264.1 + 61804 0.66 0.869636
Target:  5'- cCACCGGGcCGcGGGCAUcgccgggcaGUGCCUggcUCg -3'
miRNA:   3'- aGUGGCCCuGC-UCCGUG---------CAUGGGa--AG- -5'
24536 3' -57.3 NC_005264.1 + 40538 0.66 0.869636
Target:  5'- gUCGCCcaGGGACGuGGCgcuGCGgcUCCUg- -3'
miRNA:   3'- -AGUGG--CCCUGCuCCG---UGCauGGGAag -5'
24536 3' -57.3 NC_005264.1 + 159565 0.66 0.869636
Target:  5'- gUCGCCcaGGGACGuGGCgcuGCGgcUCCUg- -3'
miRNA:   3'- -AGUGG--CCCUGCuCCG---UGCauGGGAag -5'
24536 3' -57.3 NC_005264.1 + 18736 0.66 0.869636
Target:  5'- gUCGCUGGucuccgagaaaGACGAGGCGCGcuccgACaUCUUCc -3'
miRNA:   3'- -AGUGGCC-----------CUGCUCCGUGCa----UG-GGAAG- -5'
24536 3' -57.3 NC_005264.1 + 60423 0.66 0.868909
Target:  5'- cCACUugGGGACGGGGUauuuugcgaucGCGUAggagaucUCCUUCu -3'
miRNA:   3'- aGUGG--CCCUGCUCCG-----------UGCAU-------GGGAAG- -5'
24536 3' -57.3 NC_005264.1 + 72248 0.67 0.854712
Target:  5'- uUUACCGcGGGCaAGGCGCG-ACCUg-- -3'
miRNA:   3'- -AGUGGC-CCUGcUCCGUGCaUGGGaag -5'
24536 3' -57.3 NC_005264.1 + 108137 0.67 0.854712
Target:  5'- cCGCCGGGAUcggGGGGC-CGUcgaGCCUcgCg -3'
miRNA:   3'- aGUGGCCCUG---CUCCGuGCA---UGGGaaG- -5'
24536 3' -57.3 NC_005264.1 + 138874 0.67 0.854712
Target:  5'- -gAUCGGaGACGAccauuucgucGGCGCGUGggaCCUUCg -3'
miRNA:   3'- agUGGCC-CUGCU----------CCGUGCAUg--GGAAG- -5'
24536 3' -57.3 NC_005264.1 + 143263 0.67 0.854712
Target:  5'- -aACgGGGAC--GGCAUGUACCuCUUUg -3'
miRNA:   3'- agUGgCCCUGcuCCGUGCAUGG-GAAG- -5'
24536 3' -57.3 NC_005264.1 + 158542 0.67 0.846955
Target:  5'- aCGCCaGGGACGAuaaGG-ACGUGCUCUc- -3'
miRNA:   3'- aGUGG-CCCUGCU---CCgUGCAUGGGAag -5'
24536 3' -57.3 NC_005264.1 + 124306 0.67 0.846955
Target:  5'- -gGCCGGacGGCGGGGCGgCGgcugACCCg-- -3'
miRNA:   3'- agUGGCC--CUGCUCCGU-GCa---UGGGaag -5'
24536 3' -57.3 NC_005264.1 + 39515 0.67 0.846955
Target:  5'- aCGCCaGGGACGAuaaGG-ACGUGCUCUc- -3'
miRNA:   3'- aGUGG-CCCUGCU---CCgUGCAUGGGAag -5'
24536 3' -57.3 NC_005264.1 + 5279 0.67 0.846955
Target:  5'- -gGCCGGacGGCGGGGCGgCGgcugACCCg-- -3'
miRNA:   3'- agUGGCC--CUGCUCCGU-GCa---UGGGaag -5'
24536 3' -57.3 NC_005264.1 + 63139 0.67 0.83901
Target:  5'- aUCGCCGagauccauuuGGACGgcgaGGGCAUGaACCCUg- -3'
miRNA:   3'- -AGUGGC----------CCUGC----UCCGUGCaUGGGAag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.