miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24536 5' -63.9 NC_005264.1 + 136395 0.66 0.621307
Target:  5'- -aGCGAuGGCGaCCGacaacGCCCGUCCGcGGu -3'
miRNA:   3'- agCGUU-CCGCcGGU-----CGGGCAGGC-CCc -5'
24536 5' -63.9 NC_005264.1 + 42771 0.66 0.621307
Target:  5'- -aGCGacccGGGUGGCCAGUUaCGgCCGGcGGa -3'
miRNA:   3'- agCGU----UCCGCCGGUCGG-GCaGGCC-CC- -5'
24536 5' -63.9 NC_005264.1 + 88970 0.66 0.621307
Target:  5'- -gGCGAcGGCGGUgAGCUCaGUgaCCGGGa -3'
miRNA:   3'- agCGUU-CCGCCGgUCGGG-CA--GGCCCc -5'
24536 5' -63.9 NC_005264.1 + 161797 0.66 0.621307
Target:  5'- -aGCGacccGGGUGGCCAGUUaCGgCCGGcGGa -3'
miRNA:   3'- agCGU----UCCGCCGGUCGG-GCaGGCC-CC- -5'
24536 5' -63.9 NC_005264.1 + 15278 0.66 0.611718
Target:  5'- gUCGCAcacgucGGCGGCCAcUUCGcgCCGcGGGa -3'
miRNA:   3'- -AGCGUu-----CCGCCGGUcGGGCa-GGC-CCC- -5'
24536 5' -63.9 NC_005264.1 + 72735 0.66 0.611718
Target:  5'- aCGCGGuacacuuCGGCgGGCCUGUCCGcuGGGa -3'
miRNA:   3'- aGCGUUcc-----GCCGgUCGGGCAGGC--CCC- -5'
24536 5' -63.9 NC_005264.1 + 98153 0.66 0.611718
Target:  5'- -gGCGAGcaCGGCCuGCCCG-CCGGcaGGc -3'
miRNA:   3'- agCGUUCc-GCCGGuCGGGCaGGCC--CC- -5'
24536 5' -63.9 NC_005264.1 + 57990 0.66 0.611718
Target:  5'- cCGCGcGGCGGCCguGGCUcagCGgccCCGGcGGa -3'
miRNA:   3'- aGCGUuCCGCCGG--UCGG---GCa--GGCC-CC- -5'
24536 5' -63.9 NC_005264.1 + 47008 0.66 0.611718
Target:  5'- gUCGCAuAGcGCGGUCAGUCC---UGGGGc -3'
miRNA:   3'- -AGCGU-UC-CGCCGGUCGGGcagGCCCC- -5'
24536 5' -63.9 NC_005264.1 + 54695 0.66 0.602142
Target:  5'- cCGCGAGGCucgacGGCCc-CCCGaucCCGGcGGa -3'
miRNA:   3'- aGCGUUCCG-----CCGGucGGGCa--GGCC-CC- -5'
24536 5' -63.9 NC_005264.1 + 153890 0.66 0.602142
Target:  5'- -aGCGAGuuGGCCGGCCCGaaggCCGa-- -3'
miRNA:   3'- agCGUUCcgCCGGUCGGGCa---GGCccc -5'
24536 5' -63.9 NC_005264.1 + 58710 0.66 0.592585
Target:  5'- cCGCGuuuacuAGGCGGgCGGCCa--CCaGGGGg -3'
miRNA:   3'- aGCGU------UCCGCCgGUCGGgcaGG-CCCC- -5'
24536 5' -63.9 NC_005264.1 + 93492 0.66 0.573554
Target:  5'- gCGCugcuGGCGGCCGGCgCGUCguucccuuCGGa- -3'
miRNA:   3'- aGCGuu--CCGCCGGUCGgGCAG--------GCCcc -5'
24536 5' -63.9 NC_005264.1 + 139450 0.66 0.573554
Target:  5'- cCGUcacaagAGGGCGGCCAgGCgUGUCUGGa- -3'
miRNA:   3'- aGCG------UUCCGCCGGU-CGgGCAGGCCcc -5'
24536 5' -63.9 NC_005264.1 + 121997 0.66 0.564091
Target:  5'- gCGCuagaucGGCGGCCGGCCauagCGGGa -3'
miRNA:   3'- aGCGuu----CCGCCGGUCGGgcagGCCCc -5'
24536 5' -63.9 NC_005264.1 + 3992 0.66 0.564091
Target:  5'- -aGCAGGGCGGCaCAugccuccucGCCCa-CCaGGGGc -3'
miRNA:   3'- agCGUUCCGCCG-GU---------CGGGcaGG-CCCC- -5'
24536 5' -63.9 NC_005264.1 + 37571 0.66 0.564091
Target:  5'- cCGCGacggAGGCGGCaagucucgcggCGGCCgCGg-CGGGGg -3'
miRNA:   3'- aGCGU----UCCGCCG-----------GUCGG-GCagGCCCC- -5'
24536 5' -63.9 NC_005264.1 + 123019 0.66 0.564091
Target:  5'- -aGCAGGGCGGCaCAugccuccucGCCCa-CCaGGGGc -3'
miRNA:   3'- agCGUUCCGCCG-GU---------CGGGcaGG-CCCC- -5'
24536 5' -63.9 NC_005264.1 + 156598 0.66 0.564091
Target:  5'- cCGCGacggAGGCGGCaagucucgcggCGGCCgCGg-CGGGGg -3'
miRNA:   3'- aGCGU----UCCGCCG-----------GUCGG-GCagGCCCC- -5'
24536 5' -63.9 NC_005264.1 + 103837 0.67 0.554669
Target:  5'- uUCGCuGAGcGCcaaGCUucugGGCCCGgCCGGGGg -3'
miRNA:   3'- -AGCG-UUC-CGc--CGG----UCGGGCaGGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.