miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24538 3' -64.6 NC_005264.1 + 82255 0.67 0.46183
Target:  5'- gGGGCUcGCgaCaGGCGGCaccgGAGCGCg -3'
miRNA:   3'- gUCCGGaCGggGaCCGCCGa---CUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 68465 0.67 0.453052
Target:  5'- aGGGCCUccacuaauauugGCCa--GGCGGCUGuAGCGg -3'
miRNA:   3'- gUCCGGA------------CGGggaCCGCCGAC-UCGCg -5'
24538 3' -64.6 NC_005264.1 + 93489 0.67 0.444365
Target:  5'- gAGGC--GCUgCUGGCGGCcG-GCGCg -3'
miRNA:   3'- gUCCGgaCGGgGACCGCCGaCuCGCG- -5'
24538 3' -64.6 NC_005264.1 + 153511 0.67 0.444365
Target:  5'- -cGGCC-GCCCCUGGCGGg-GA-CGa -3'
miRNA:   3'- guCCGGaCGGGGACCGCCgaCUcGCg -5'
24538 3' -64.6 NC_005264.1 + 34120 0.67 0.435772
Target:  5'- -uGGCCuucgcUGCCUCUGGUGaC-GGGCGCg -3'
miRNA:   3'- guCCGG-----ACGGGGACCGCcGaCUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 120273 0.67 0.427276
Target:  5'- -uGGCUcGCCUCcGGCaaGGCUGccGGCGCg -3'
miRNA:   3'- guCCGGaCGGGGaCCG--CCGAC--UCGCG- -5'
24538 3' -64.6 NC_005264.1 + 84621 0.67 0.427276
Target:  5'- gCAGcGUUgcuccguacgUGCCCCUGGCGGUguccGuAGCGUa -3'
miRNA:   3'- -GUC-CGG----------ACGGGGACCGCCGa---C-UCGCG- -5'
24538 3' -64.6 NC_005264.1 + 9892 0.68 0.418879
Target:  5'- -cGGCCUucccagCCCUGGCGGCaGAaaggcgGCGCu -3'
miRNA:   3'- guCCGGAcg----GGGACCGCCGaCU------CGCG- -5'
24538 3' -64.6 NC_005264.1 + 128918 0.68 0.418879
Target:  5'- -cGGCCUucccagCCCUGGCGGCaGAaaggcgGCGCu -3'
miRNA:   3'- guCCGGAcg----GGGACCGCCGaCU------CGCG- -5'
24538 3' -64.6 NC_005264.1 + 152752 0.68 0.418879
Target:  5'- -cGGCCgcgaUGCCCCcGGCGGgaGAuucCGCc -3'
miRNA:   3'- guCCGG----ACGGGGaCCGCCgaCUc--GCG- -5'
24538 3' -64.6 NC_005264.1 + 132087 0.68 0.410583
Target:  5'- -cGGCCcucguuuCCCCUGaGCGGCUcuuuGCGCg -3'
miRNA:   3'- guCCGGac-----GGGGAC-CGCCGAcu--CGCG- -5'
24538 3' -64.6 NC_005264.1 + 142317 0.68 0.410583
Target:  5'- aCGGGCgCaacgcgUGCCCCUGGCuuCUcGGCGCa -3'
miRNA:   3'- -GUCCG-G------ACGGGGACCGccGAcUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 104832 0.68 0.40239
Target:  5'- -cGGCCUGUCCgCcggGGCcGCUGAGC-Ca -3'
miRNA:   3'- guCCGGACGGG-Ga--CCGcCGACUCGcG- -5'
24538 3' -64.6 NC_005264.1 + 58258 0.68 0.40239
Target:  5'- -cGGCCcGaUCCCgugGGCGGCauGGCGCu -3'
miRNA:   3'- guCCGGaC-GGGGa--CCGCCGacUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 75197 0.68 0.394301
Target:  5'- cCAGGUCccgcGCCCCacGCGGCUGcaucggcccuGCGCg -3'
miRNA:   3'- -GUCCGGa---CGGGGacCGCCGACu---------CGCG- -5'
24538 3' -64.6 NC_005264.1 + 88010 0.68 0.389499
Target:  5'- aAGaCCUGCCCCUGGUgcccacguuccucggGGCcGaAGCGUa -3'
miRNA:   3'- gUCcGGACGGGGACCG---------------CCGaC-UCGCG- -5'
24538 3' -64.6 NC_005264.1 + 157362 0.68 0.386318
Target:  5'- gCGGGCCcugGCCgUgaugcugGGCGGCgGGGCGg -3'
miRNA:   3'- -GUCCGGa--CGGgGa------CCGCCGaCUCGCg -5'
24538 3' -64.6 NC_005264.1 + 158825 0.68 0.386318
Target:  5'- -cGGCCcgccaaGCCCCUGGUGGgCgagGAG-GCa -3'
miRNA:   3'- guCCGGa-----CGGGGACCGCC-Ga--CUCgCG- -5'
24538 3' -64.6 NC_005264.1 + 38335 0.68 0.386318
Target:  5'- gCGGGCCcugGCCgUgaugcugGGCGGCgGGGCGg -3'
miRNA:   3'- -GUCCGGa--CGGgGa------CCGCCGaCUCGCg -5'
24538 3' -64.6 NC_005264.1 + 39799 0.68 0.386318
Target:  5'- -cGGCCcgccaaGCCCCUGGUGGgCgagGAG-GCa -3'
miRNA:   3'- guCCGGa-----CGGGGACCGCC-Ga--CUCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.