miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24538 5' -55 NC_005264.1 + 121719 0.67 0.889158
Target:  5'- aGCGUGgUggcggaggagggagUCCagauagGCCGCCCCGGCc--- -3'
miRNA:   3'- -CGUACgAa-------------AGG------UGGCGGGGCCGuuuu -5'
24538 5' -55 NC_005264.1 + 54368 0.67 0.886375
Target:  5'- aGCGUcGCgcggCCACCGgauCCCCGcGCGGAu -3'
miRNA:   3'- -CGUA-CGaaa-GGUGGC---GGGGC-CGUUUu -5'
24538 5' -55 NC_005264.1 + 106028 0.67 0.879255
Target:  5'- uCAUGCg--CCGCCGaCCgacaCCGGCGAu- -3'
miRNA:   3'- cGUACGaaaGGUGGC-GG----GGCCGUUuu -5'
24538 5' -55 NC_005264.1 + 65745 0.67 0.879255
Target:  5'- -uGUGUggUCCGCCGUCggCCGGCGc-- -3'
miRNA:   3'- cgUACGaaAGGUGGCGG--GGCCGUuuu -5'
24538 5' -55 NC_005264.1 + 27889 0.67 0.879255
Target:  5'- uCGUGuCUggCCAgCGUCUCGGCGAGGg -3'
miRNA:   3'- cGUAC-GAaaGGUgGCGGGGCCGUUUU- -5'
24538 5' -55 NC_005264.1 + 63038 0.67 0.871907
Target:  5'- gGUcgGCga-CCAUCGCCUCGGCc--- -3'
miRNA:   3'- -CGuaCGaaaGGUGGCGGGGCCGuuuu -5'
24538 5' -55 NC_005264.1 + 117696 0.68 0.864335
Target:  5'- gGCGUcgaGCg--UCACCGCCCCGGa---- -3'
miRNA:   3'- -CGUA---CGaaaGGUGGCGGGGCCguuuu -5'
24538 5' -55 NC_005264.1 + 40740 0.68 0.856546
Target:  5'- cGCG-GCagagUUCACgGCCUCGGCAAAu -3'
miRNA:   3'- -CGUaCGaa--AGGUGgCGGGGCCGUUUu -5'
24538 5' -55 NC_005264.1 + 15349 0.68 0.854963
Target:  5'- uGCGUGCggaaccucugCCACacacuaGCCCCGGUg--- -3'
miRNA:   3'- -CGUACGaaa-------GGUGg-----CGGGGCCGuuuu -5'
24538 5' -55 NC_005264.1 + 30847 0.68 0.848547
Target:  5'- cGCcgGUcggcCCACCGCCaCCGGCc--- -3'
miRNA:   3'- -CGuaCGaaa-GGUGGCGG-GGCCGuuuu -5'
24538 5' -55 NC_005264.1 + 153497 0.68 0.848547
Target:  5'- uGCcgGCaaaacggCgGCCGCCCCuGGCGGGGa -3'
miRNA:   3'- -CGuaCGaaa----GgUGGCGGGG-CCGUUUU- -5'
24538 5' -55 NC_005264.1 + 122503 0.68 0.831944
Target:  5'- gGCGauggGCUUgCCGCCGCaCgCGGCGGGGg -3'
miRNA:   3'- -CGUa---CGAAaGGUGGCG-GgGCCGUUUU- -5'
24538 5' -55 NC_005264.1 + 45901 0.68 0.831944
Target:  5'- -aGUGUaUUgCGCCGCCgCGGCAAu- -3'
miRNA:   3'- cgUACGaAAgGUGGCGGgGCCGUUuu -5'
24538 5' -55 NC_005264.1 + 3476 0.68 0.831944
Target:  5'- gGCGauggGCUUgCCGCCGCaCgCGGCGGGGg -3'
miRNA:   3'- -CGUa---CGAAaGGUGGCG-GgGCCGUUUU- -5'
24538 5' -55 NC_005264.1 + 76661 0.68 0.823356
Target:  5'- -gAUGCgg-CCACCGgUgCGGCAGAAg -3'
miRNA:   3'- cgUACGaaaGGUGGCgGgGCCGUUUU- -5'
24538 5' -55 NC_005264.1 + 43549 0.68 0.823356
Target:  5'- uGCA-GCUgcccagCCACCGCgagcaaCCGGCGAGu -3'
miRNA:   3'- -CGUaCGAaa----GGUGGCGg-----GGCCGUUUu -5'
24538 5' -55 NC_005264.1 + 3976 0.69 0.805646
Target:  5'- gGUAUGCUguuaGCCGCUUCGGCGGc- -3'
miRNA:   3'- -CGUACGAaaggUGGCGGGGCCGUUuu -5'
24538 5' -55 NC_005264.1 + 98079 0.69 0.796543
Target:  5'- uGCAUGgUgugCCccgGCCGCCCCGGgGu-- -3'
miRNA:   3'- -CGUACgAaa-GG---UGGCGGGGCCgUuuu -5'
24538 5' -55 NC_005264.1 + 157135 0.69 0.787285
Target:  5'- --uUGUUUUCCGCCGCCa-GGCGu-- -3'
miRNA:   3'- cguACGAAAGGUGGCGGggCCGUuuu -5'
24538 5' -55 NC_005264.1 + 38108 0.69 0.787285
Target:  5'- --uUGUUUUCCGCCGCCa-GGCGu-- -3'
miRNA:   3'- cguACGAAAGGUGGCGGggCCGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.