miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24539 3' -63.8 NC_005264.1 + 20296 0.66 0.61219
Target:  5'- cUUGCGGCccCGA-GGGGCUGAGGu-- -3'
miRNA:   3'- cAGCGCCGu-GCUgCCCCGGCUCCcac -5'
24539 3' -63.8 NC_005264.1 + 22881 0.66 0.61219
Target:  5'- uUCGCaGCAUcuccgGGCaGGGcCCGAGGGUc -3'
miRNA:   3'- cAGCGcCGUG-----CUGcCCC-GGCUCCCAc -5'
24539 3' -63.8 NC_005264.1 + 29620 0.66 0.61219
Target:  5'- -gCGCGGCgGCGcACGGGGUaaaGAGGu-- -3'
miRNA:   3'- caGCGCCG-UGC-UGCCCCGg--CUCCcac -5'
24539 3' -63.8 NC_005264.1 + 136073 0.66 0.602581
Target:  5'- --aGCGGacuaaUugGGCuGGGGCUGGGGGg- -3'
miRNA:   3'- cagCGCC-----GugCUG-CCCCGGCUCCCac -5'
24539 3' -63.8 NC_005264.1 + 3073 0.66 0.583428
Target:  5'- cUCGCcGCGacUGGCGGcGGCCGAGGa-- -3'
miRNA:   3'- cAGCGcCGU--GCUGCC-CCGGCUCCcac -5'
24539 3' -63.8 NC_005264.1 + 122100 0.66 0.583428
Target:  5'- cUCGCcGCGacUGGCGGcGGCCGAGGa-- -3'
miRNA:   3'- cAGCGcCGU--GCUGCC-CCGGCUCCcac -5'
24539 3' -63.8 NC_005264.1 + 49275 0.66 0.583428
Target:  5'- cGUCGCGGa--GACGGuGuuGGGGGa- -3'
miRNA:   3'- -CAGCGCCgugCUGCCcCggCUCCCac -5'
24539 3' -63.8 NC_005264.1 + 100478 0.66 0.573895
Target:  5'- uGUCGCGGCG-GcCaGGGCCcugGAGGGg- -3'
miRNA:   3'- -CAGCGCCGUgCuGcCCCGG---CUCCCac -5'
24539 3' -63.8 NC_005264.1 + 125498 0.66 0.573895
Target:  5'- -gCGCGGCgaACGuCGGGGUgcgcggccauCGAGGGc- -3'
miRNA:   3'- caGCGCCG--UGCuGCCCCG----------GCUCCCac -5'
24539 3' -63.8 NC_005264.1 + 69820 0.66 0.573895
Target:  5'- -gCGCGG-ACGACGccGCCG-GGGUGa -3'
miRNA:   3'- caGCGCCgUGCUGCccCGGCuCCCAC- -5'
24539 3' -63.8 NC_005264.1 + 6471 0.66 0.573895
Target:  5'- -gCGCGGCgaACGuCGGGGUgcgcggccauCGAGGGc- -3'
miRNA:   3'- caGCGCCG--UGCuGCCCCG----------GCUCCCac -5'
24539 3' -63.8 NC_005264.1 + 105610 0.66 0.572943
Target:  5'- -cCGUGGUGCGugGGaaauugaGGCCGucGGGGUc -3'
miRNA:   3'- caGCGCCGUGCugCC-------CCGGC--UCCCAc -5'
24539 3' -63.8 NC_005264.1 + 55832 0.66 0.564398
Target:  5'- gGUgGCGGCGCGGCugacuGGGCCucAGGGc- -3'
miRNA:   3'- -CAgCGCCGUGCUGc----CCCGGc-UCCCac -5'
24539 3' -63.8 NC_005264.1 + 124999 0.66 0.564398
Target:  5'- uUCGCGGaugggaGACGuGGGCCaAGGGg- -3'
miRNA:   3'- cAGCGCCgug---CUGC-CCCGGcUCCCac -5'
24539 3' -63.8 NC_005264.1 + 62229 0.67 0.554943
Target:  5'- -cCGCGGC-CGcuuCGGGGUCGucGGUa -3'
miRNA:   3'- caGCGCCGuGCu--GCCCCGGCucCCAc -5'
24539 3' -63.8 NC_005264.1 + 81645 0.67 0.554943
Target:  5'- cUCGCGGUgguGAUGGGGCUGuucgucuuGGGGUc -3'
miRNA:   3'- cAGCGCCGug-CUGCCCCGGC--------UCCCAc -5'
24539 3' -63.8 NC_005264.1 + 132755 0.67 0.554943
Target:  5'- cUCGCgauucuguccgGGCGCGGCGGcGCCGAcgaGGGg- -3'
miRNA:   3'- cAGCG-----------CCGUGCUGCCcCGGCU---CCCac -5'
24539 3' -63.8 NC_005264.1 + 116524 0.67 0.554943
Target:  5'- uUCGCGGUcuuCGGUGGGGUCGuuGGGGg- -3'
miRNA:   3'- cAGCGCCGu--GCUGCCCCGGC--UCCCac -5'
24539 3' -63.8 NC_005264.1 + 104480 0.67 0.552116
Target:  5'- aUCGCGccggccccgccagaGUACGACaGGGgCGAGGGg- -3'
miRNA:   3'- cAGCGC--------------CGUGCUGcCCCgGCUCCCac -5'
24539 3' -63.8 NC_005264.1 + 56934 0.67 0.545536
Target:  5'- -gCGUGGCGC-ACGGGGC-GAcGGGUu -3'
miRNA:   3'- caGCGCCGUGcUGCCCCGgCU-CCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.