miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24539 5' -53.8 NC_005264.1 + 156007 0.66 0.970992
Target:  5'- aCCAGcaagguacGCcCGGCgaCGCUUG-CGCGGUGg -3'
miRNA:   3'- cGGUU--------UGuGCCG--GCGAACaGCGCUAC- -5'
24539 5' -53.8 NC_005264.1 + 106335 0.66 0.970992
Target:  5'- cGCCGAugAuauuuucugaCuGCCGCUUGgCGCGGUu -3'
miRNA:   3'- -CGGUUugU----------GcCGGCGAACaGCGCUAc -5'
24539 5' -53.8 NC_005264.1 + 77952 0.66 0.970992
Target:  5'- cGUCcuGCGCGGcCCGCUaUGUCuuauguCGAUGg -3'
miRNA:   3'- -CGGuuUGUGCC-GGCGA-ACAGc-----GCUAC- -5'
24539 5' -53.8 NC_005264.1 + 16174 0.66 0.970992
Target:  5'- cGCCcuGCGCGGagGUcgGUCGCGGc- -3'
miRNA:   3'- -CGGuuUGUGCCggCGaaCAGCGCUac -5'
24539 5' -53.8 NC_005264.1 + 74096 0.66 0.970992
Target:  5'- gGUCGuacauGGCGCGGUCGacgcUGUCGCGGcUGg -3'
miRNA:   3'- -CGGU-----UUGUGCCGGCga--ACAGCGCU-AC- -5'
24539 5' -53.8 NC_005264.1 + 13030 0.66 0.970703
Target:  5'- cGCgGGACccuACGGCCGCUcgucugcUGUCGUu-UGg -3'
miRNA:   3'- -CGgUUUG---UGCCGGCGA-------ACAGCGcuAC- -5'
24539 5' -53.8 NC_005264.1 + 151096 0.66 0.968007
Target:  5'- cGCCAGACgACGuGauGUUUGUCGCcAUGu -3'
miRNA:   3'- -CGGUUUG-UGC-CggCGAACAGCGcUAC- -5'
24539 5' -53.8 NC_005264.1 + 48684 0.66 0.968007
Target:  5'- uCUggGCGCGaGuCUGCUcGUCGCGGUc -3'
miRNA:   3'- cGGuuUGUGC-C-GGCGAaCAGCGCUAc -5'
24539 5' -53.8 NC_005264.1 + 8381 0.66 0.96707
Target:  5'- cGCCGGACGCGGCgCGUUgaagcugccggagcUGUUGUugucgagguuGAUGc -3'
miRNA:   3'- -CGGUUUGUGCCG-GCGA--------------ACAGCG----------CUAC- -5'
24539 5' -53.8 NC_005264.1 + 127408 0.66 0.96707
Target:  5'- cGCCGGACGCGGCgCGUUgaagcugccggagcUGUUGUugucgagguuGAUGc -3'
miRNA:   3'- -CGGUUUGUGCCG-GCGA--------------ACAGCG----------CUAC- -5'
24539 5' -53.8 NC_005264.1 + 49809 0.66 0.96481
Target:  5'- cGUCGAgguGCAgGGCCGCguauucuuuuUUGUgCGCGAg- -3'
miRNA:   3'- -CGGUU---UGUgCCGGCG----------AACA-GCGCUac -5'
24539 5' -53.8 NC_005264.1 + 9339 0.66 0.96481
Target:  5'- cGCCAGGgGCGGCCGCcguuUUGcCGgcaGAg- -3'
miRNA:   3'- -CGGUUUgUGCCGGCG----AACaGCg--CUac -5'
24539 5' -53.8 NC_005264.1 + 37382 0.66 0.96481
Target:  5'- cGCCAgcGACGCcGCCGCgagagUGUaCGUGGa- -3'
miRNA:   3'- -CGGU--UUGUGcCGGCGa----ACA-GCGCUac -5'
24539 5' -53.8 NC_005264.1 + 57868 0.66 0.96481
Target:  5'- cGCCAGagacggcgGCACGGCgGCcaUGgCGCgGAUGa -3'
miRNA:   3'- -CGGUU--------UGUGCCGgCGa-ACaGCG-CUAC- -5'
24539 5' -53.8 NC_005264.1 + 138547 0.66 0.96481
Target:  5'- aGCC--ACAgaGGCCGCcgUGuUCGCGAa- -3'
miRNA:   3'- -CGGuuUGUg-CCGGCGa-AC-AGCGCUac -5'
24539 5' -53.8 NC_005264.1 + 40146 0.66 0.96481
Target:  5'- cGCCGAG-ACGGCCGCccaUCGuCGAg- -3'
miRNA:   3'- -CGGUUUgUGCCGGCGaacAGC-GCUac -5'
24539 5' -53.8 NC_005264.1 + 159173 0.66 0.96481
Target:  5'- cGCCGAG-ACGGCCGCccaUCGuCGAg- -3'
miRNA:   3'- -CGGUUUgUGCCGGCGaacAGC-GCUac -5'
24539 5' -53.8 NC_005264.1 + 156409 0.66 0.96481
Target:  5'- cGCCAgcGACGCcGCCGCgagagUGUaCGUGGa- -3'
miRNA:   3'- -CGGU--UUGUGcCGGCGa----ACA-GCGCUac -5'
24539 5' -53.8 NC_005264.1 + 71819 0.66 0.961395
Target:  5'- gGCCgAAGC-CGcCCGCgggGUCGCGAa- -3'
miRNA:   3'- -CGG-UUUGuGCcGGCGaa-CAGCGCUac -5'
24539 5' -53.8 NC_005264.1 + 3794 0.66 0.957757
Target:  5'- -aCGAACugGGCgGU-UGUUGCGAg- -3'
miRNA:   3'- cgGUUUGugCCGgCGaACAGCGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.