miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24540 5' -54.1 NC_005264.1 + 120045 0.65 0.973981
Target:  5'- cUCAGGGGGUcuaGCGggGGGgaaguagguggcggaCGCCGg -3'
miRNA:   3'- -GGUCCUCCG---CGCuuCUUaaug-----------GCGGC- -5'
24540 5' -54.1 NC_005264.1 + 44301 0.65 0.973981
Target:  5'- gCGGGAgagaagcguGGUGCGAAGcuugcugaacgcaGA--ACCGCCGa -3'
miRNA:   3'- gGUCCU---------CCGCGCUUC-------------UUaaUGGCGGC- -5'
24540 5' -54.1 NC_005264.1 + 20014 0.66 0.971528
Target:  5'- uCCGGuuGGCGCGAuuguGGAGUccUACCaugGCCu -3'
miRNA:   3'- -GGUCcuCCGCGCU----UCUUA--AUGG---CGGc -5'
24540 5' -54.1 NC_005264.1 + 140054 0.66 0.971528
Target:  5'- aCAGG-GGCGUGAGcAGUgucGCCGCg- -3'
miRNA:   3'- gGUCCuCCGCGCUUcUUAa--UGGCGgc -5'
24540 5' -54.1 NC_005264.1 + 132604 0.66 0.968612
Target:  5'- aCCGGGgaaGGGCGgaaCGAAGAcgggACCGgCGa -3'
miRNA:   3'- -GGUCC---UCCGC---GCUUCUuaa-UGGCgGC- -5'
24540 5' -54.1 NC_005264.1 + 13577 0.66 0.968612
Target:  5'- aCCGGGgaaGGGCGgaaCGAAGAcgggACCGgCGa -3'
miRNA:   3'- -GGUCC---UCCGC---GCUUCUuaa-UGGCgGC- -5'
24540 5' -54.1 NC_005264.1 + 3686 0.66 0.968612
Target:  5'- gCGGGGccuGGCGCGGaaAGGGcgcacaguacUUGCCGCgGg -3'
miRNA:   3'- gGUCCU---CCGCGCU--UCUU----------AAUGGCGgC- -5'
24540 5' -54.1 NC_005264.1 + 52065 0.66 0.968612
Target:  5'- aCCuGGcuuuGGCGCGAAaGAA--GCUGCUGu -3'
miRNA:   3'- -GGuCCu---CCGCGCUU-CUUaaUGGCGGC- -5'
24540 5' -54.1 NC_005264.1 + 122756 0.66 0.96549
Target:  5'- aCgAGGAaGaCGaCGAGGAGcggggccucUUGCCGCCGg -3'
miRNA:   3'- -GgUCCUcC-GC-GCUUCUU---------AAUGGCGGC- -5'
24540 5' -54.1 NC_005264.1 + 135943 0.66 0.96549
Target:  5'- aCAGGcggccGGGgGCGAGcGAAUUacucgcACUGCCGc -3'
miRNA:   3'- gGUCC-----UCCgCGCUU-CUUAA------UGGCGGC- -5'
24540 5' -54.1 NC_005264.1 + 3730 0.66 0.96549
Target:  5'- aCgAGGAaGaCGaCGAGGAGcggggccucUUGCCGCCGg -3'
miRNA:   3'- -GgUCCUcC-GC-GCUUCUU---------AAUGGCGGC- -5'
24540 5' -54.1 NC_005264.1 + 137856 0.66 0.962156
Target:  5'- gCAGGGGGUaCGggGAca-ACCGCa- -3'
miRNA:   3'- gGUCCUCCGcGCuuCUuaaUGGCGgc -5'
24540 5' -54.1 NC_005264.1 + 53121 0.66 0.961463
Target:  5'- gCgAGGGGGC-CGAGGAGgccgggcaauCUGCCGc -3'
miRNA:   3'- -GgUCCUCCGcGCUUCUUaau-------GGCGGC- -5'
24540 5' -54.1 NC_005264.1 + 125930 0.66 0.958604
Target:  5'- gCCAGaGcAGGCGaCGAGGAAUuaaUACCuGUCu -3'
miRNA:   3'- -GGUC-C-UCCGC-GCUUCUUA---AUGG-CGGc -5'
24540 5' -54.1 NC_005264.1 + 117839 0.66 0.958604
Target:  5'- -gGGGAGGCGCGGcGGAGUg--CGCa- -3'
miRNA:   3'- ggUCCUCCGCGCU-UCUUAaugGCGgc -5'
24540 5' -54.1 NC_005264.1 + 65463 0.66 0.958604
Target:  5'- cCCuGGGGGCuuuUGggGGAUacGCCGCUGc -3'
miRNA:   3'- -GGuCCUCCGc--GCuuCUUAa-UGGCGGC- -5'
24540 5' -54.1 NC_005264.1 + 142451 0.67 0.95483
Target:  5'- uCguGGuuGCGgGggGAAUUACUGCg- -3'
miRNA:   3'- -GguCCucCGCgCuuCUUAAUGGCGgc -5'
24540 5' -54.1 NC_005264.1 + 76502 0.67 0.95483
Target:  5'- gUCGGGGGGaauagGCGAccgucUACCGCCGc -3'
miRNA:   3'- -GGUCCUCCg----CGCUucuuaAUGGCGGC- -5'
24540 5' -54.1 NC_005264.1 + 70630 0.67 0.95483
Target:  5'- gCCAGGAGGaaCGUGggGA-----CGCCa -3'
miRNA:   3'- -GGUCCUCC--GCGCuuCUuaaugGCGGc -5'
24540 5' -54.1 NC_005264.1 + 66777 0.67 0.95483
Target:  5'- aCAGGccGCGCGAAGG----UCGCCu -3'
miRNA:   3'- gGUCCucCGCGCUUCUuaauGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.