miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24541 5' -61.8 NC_005264.1 + 122294 1.1 0.000876
Target:  5'- uCCAGGAGCCGCAGCGCCACGUCCCUGg -3'
miRNA:   3'- -GGUCCUCGGCGUCGCGGUGCAGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 3267 1.1 0.000876
Target:  5'- uCCAGGAGCCGCAGCGCCACGUCCCUGg -3'
miRNA:   3'- -GGUCCUCGGCGUCGCGGUGCAGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 32924 0.73 0.307696
Target:  5'- gCAGGGGUCGCggGGCGCCGCGUgagUCUGu -3'
miRNA:   3'- gGUCCUCGGCG--UCGCGGUGCAg--GGAC- -5'
24541 5' -61.8 NC_005264.1 + 131641 0.73 0.314526
Target:  5'- uCUGGaGGGCCGCAGCcCCcCGUCCCa- -3'
miRNA:   3'- -GGUC-CUCGGCGUCGcGGuGCAGGGac -5'
24541 5' -61.8 NC_005264.1 + 12614 0.73 0.314526
Target:  5'- uCUGGaGGGCCGCAGCcCCcCGUCCCa- -3'
miRNA:   3'- -GGUC-CUCGGCGUCGcGGuGCAGGGac -5'
24541 5' -61.8 NC_005264.1 + 112337 0.72 0.357143
Target:  5'- aCCaAGGcagaacuGGCCGCGGCcgugGCCACGUCCUc- -3'
miRNA:   3'- -GG-UCC-------UCGGCGUCG----CGGUGCAGGGac -5'
24541 5' -61.8 NC_005264.1 + 149388 0.72 0.357899
Target:  5'- gCAGGAgccccuucggcGCCGCcGCGUCGCGUCUCg- -3'
miRNA:   3'- gGUCCU-----------CGGCGuCGCGGUGCAGGGac -5'
24541 5' -61.8 NC_005264.1 + 30361 0.72 0.357899
Target:  5'- gCAGGAgccccuucggcGCCGCcGCGUCGCGUCUCg- -3'
miRNA:   3'- gGUCCU-----------CGGCGuCGCGGUGCAGGGac -5'
24541 5' -61.8 NC_005264.1 + 84150 0.71 0.381105
Target:  5'- cCCGGGAagugGUCGCAGCGCgCGCGccggaCCUGu -3'
miRNA:   3'- -GGUCCU----CGGCGUCGCG-GUGCag---GGAC- -5'
24541 5' -61.8 NC_005264.1 + 140054 0.71 0.397124
Target:  5'- aCAGGGGCgugaGCAGUgucGCCGCGcCCCUc -3'
miRNA:   3'- gGUCCUCGg---CGUCG---CGGUGCaGGGAc -5'
24541 5' -61.8 NC_005264.1 + 147113 0.71 0.405294
Target:  5'- gCCA--GGCCGCcGUGCCGCGUUCUUGc -3'
miRNA:   3'- -GGUccUCGGCGuCGCGGUGCAGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 127333 0.7 0.430428
Target:  5'- aCGGGGgcaccugcGCCGCGGCGUCGCcgucGUCCCc- -3'
miRNA:   3'- gGUCCU--------CGGCGUCGCGGUG----CAGGGac -5'
24541 5' -61.8 NC_005264.1 + 8306 0.7 0.430428
Target:  5'- aCGGGGgcaccugcGCCGCGGCGUCGCcgucGUCCCc- -3'
miRNA:   3'- gGUCCU--------CGGCGUCGCGGUG----CAGGGac -5'
24541 5' -61.8 NC_005264.1 + 4688 0.7 0.430428
Target:  5'- --cGGGGCgaGUGGCGCCGCGUCCa-- -3'
miRNA:   3'- gguCCUCGg-CGUCGCGGUGCAGGgac -5'
24541 5' -61.8 NC_005264.1 + 123715 0.7 0.430428
Target:  5'- --cGGGGCgaGUGGCGCCGCGUCCa-- -3'
miRNA:   3'- gguCCUCGg-CGUCGCGGUGCAGGgac -5'
24541 5' -61.8 NC_005264.1 + 87751 0.7 0.439007
Target:  5'- gCCGGcGccuGCCGCAGCGCCGCGaagaaCCa- -3'
miRNA:   3'- -GGUC-Cu--CGGCGUCGCGGUGCag---GGac -5'
24541 5' -61.8 NC_005264.1 + 93173 0.7 0.456453
Target:  5'- aCCAa-GGCCcCAGCGCCGCGUgCCCg- -3'
miRNA:   3'- -GGUccUCGGcGUCGCGGUGCA-GGGac -5'
24541 5' -61.8 NC_005264.1 + 125699 0.7 0.465314
Target:  5'- aCAuGGAGagaCCGcCGGCGCCugGUgcCCCUGu -3'
miRNA:   3'- gGU-CCUC---GGC-GUCGCGGugCA--GGGAC- -5'
24541 5' -61.8 NC_005264.1 + 162818 0.69 0.4833
Target:  5'- gCUAGG-GCCGCGGCGUUaugGCGUgCCg- -3'
miRNA:   3'- -GGUCCuCGGCGUCGCGG---UGCAgGGac -5'
24541 5' -61.8 NC_005264.1 + 83430 0.69 0.4833
Target:  5'- gCUGGGuuccGCCGCGGCcucGCCACG-CCCg- -3'
miRNA:   3'- -GGUCCu---CGGCGUCG---CGGUGCaGGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.