miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24541 5' -61.8 NC_005264.1 + 20253 0.66 0.65559
Target:  5'- gCAGGGGuuGCGGCGCgGCcUCgCg- -3'
miRNA:   3'- gGUCCUCggCGUCGCGgUGcAGgGac -5'
24541 5' -61.8 NC_005264.1 + 152267 0.66 0.65559
Target:  5'- aCCAGGAaggaacgaggaaGCaGCGGCGaacgcgcgauCCGCGcCCCUGa -3'
miRNA:   3'- -GGUCCU------------CGgCGUCGC----------GGUGCaGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 149474 0.66 0.65559
Target:  5'- -gGGGAGCCGCGG-GCCcCGgcucggCCCc- -3'
miRNA:   3'- ggUCCUCGGCGUCgCGGuGCa-----GGGac -5'
24541 5' -61.8 NC_005264.1 + 92043 0.66 0.645815
Target:  5'- aUguGGAgGUCGguGgGCCGCGcUCCUUGc -3'
miRNA:   3'- -GguCCU-CGGCguCgCGGUGC-AGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 110118 0.66 0.645815
Target:  5'- aCAGGGGCCGagAGcCGCCGCGcUuuUGg -3'
miRNA:   3'- gGUCCUCGGCg-UC-GCGGUGCaGggAC- -5'
24541 5' -61.8 NC_005264.1 + 145111 0.66 0.645815
Target:  5'- aUAGGuugcGCCGCGGCGCgCAgGuaauuUCCCUa -3'
miRNA:   3'- gGUCCu---CGGCGUCGCG-GUgC-----AGGGAc -5'
24541 5' -61.8 NC_005264.1 + 64137 0.66 0.645815
Target:  5'- aUCAGGcucGCCaCGGCGCCGCGaUCCg-- -3'
miRNA:   3'- -GGUCCu--CGGcGUCGCGGUGC-AGGgac -5'
24541 5' -61.8 NC_005264.1 + 51424 0.67 0.63603
Target:  5'- cCgGGGAGCCGCcGuCGCCcccucCGUCCUc- -3'
miRNA:   3'- -GgUCCUCGGCGuC-GCGGu----GCAGGGac -5'
24541 5' -61.8 NC_005264.1 + 93076 0.67 0.63603
Target:  5'- -gAGGGGCCGCGGCGaCCuCGgcuUCUCa- -3'
miRNA:   3'- ggUCCUCGGCGUCGC-GGuGC---AGGGac -5'
24541 5' -61.8 NC_005264.1 + 142553 0.67 0.63603
Target:  5'- cCCucGGGGCCGCaAGCGCgCAgacgGUCCCc- -3'
miRNA:   3'- -GGu-CCUCGGCG-UCGCG-GUg---CAGGGac -5'
24541 5' -61.8 NC_005264.1 + 146617 0.67 0.626243
Target:  5'- -aGGGGGCUcagaggGUAGCGCggCGCGUCCCc- -3'
miRNA:   3'- ggUCCUCGG------CGUCGCG--GUGCAGGGac -5'
24541 5' -61.8 NC_005264.1 + 50320 0.67 0.626243
Target:  5'- gCCuGGAGCCGCGaguaCGCgGCGUCgaccuuguCCUGc -3'
miRNA:   3'- -GGuCCUCGGCGUc---GCGgUGCAG--------GGAC- -5'
24541 5' -61.8 NC_005264.1 + 86988 0.67 0.626243
Target:  5'- uUCuGGAGUCGCAGCGCCuCGUg---- -3'
miRNA:   3'- -GGuCCUCGGCGUCGCGGuGCAgggac -5'
24541 5' -61.8 NC_005264.1 + 123305 0.67 0.616459
Target:  5'- aCCGcGGGGCgGCGGCagagagcacGuCCuuauCGUCCCUGg -3'
miRNA:   3'- -GGU-CCUCGgCGUCG---------C-GGu---GCAGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 4278 0.67 0.616459
Target:  5'- aCCGcGGGGCgGCGGCagagagcacGuCCuuauCGUCCCUGg -3'
miRNA:   3'- -GGU-CCUCGgCGUCG---------C-GGu---GCAGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 124427 0.67 0.606687
Target:  5'- gCCAGGGGCCaGCAGgGCguaCGCGgcaUCUGu -3'
miRNA:   3'- -GGUCCUCGG-CGUCgCG---GUGCag-GGAC- -5'
24541 5' -61.8 NC_005264.1 + 122775 0.67 0.606687
Target:  5'- gCGGGGccucuugccGCCGgGGCGCUGCGggCCCUu -3'
miRNA:   3'- gGUCCU---------CGGCgUCGCGGUGCa-GGGAc -5'
24541 5' -61.8 NC_005264.1 + 5400 0.67 0.606687
Target:  5'- gCCAGGGGCCaGCAGgGCguaCGCGgcaUCUGu -3'
miRNA:   3'- -GGUCCUCGG-CGUCgCG---GUGCag-GGAC- -5'
24541 5' -61.8 NC_005264.1 + 3749 0.67 0.606687
Target:  5'- gCGGGGccucuugccGCCGgGGCGCUGCGggCCCUu -3'
miRNA:   3'- gGUCCU---------CGGCgUCGCGGUGCa-GGGAc -5'
24541 5' -61.8 NC_005264.1 + 107904 0.67 0.603758
Target:  5'- uUCAGGAGCCacucGCagccguucgccagcAGCGCCGCGaCCUUc -3'
miRNA:   3'- -GGUCCUCGG----CG--------------UCGCGGUGCaGGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.