miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24541 5' -61.8 NC_005264.1 + 2394 0.68 0.577498
Target:  5'- gCAGGAGCC-CGGCGCCgGCcUgCCUa -3'
miRNA:   3'- gGUCCUCGGcGUCGCGG-UGcAgGGAc -5'
24541 5' -61.8 NC_005264.1 + 3267 1.1 0.000876
Target:  5'- uCCAGGAGCCGCAGCGCCACGUCCCUGg -3'
miRNA:   3'- -GGUCCUCGGCGUCGCGGUGCAGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 3416 0.68 0.577498
Target:  5'- gCGGGGGagggaCGUAGgGCCGCG-CCCg- -3'
miRNA:   3'- gGUCCUCg----GCGUCgCGGUGCaGGGac -5'
24541 5' -61.8 NC_005264.1 + 3749 0.67 0.606687
Target:  5'- gCGGGGccucuugccGCCGgGGCGCUGCGggCCCUu -3'
miRNA:   3'- gGUCCU---------CGGCgUCGCGGUGCa-GGGAc -5'
24541 5' -61.8 NC_005264.1 + 4278 0.67 0.616459
Target:  5'- aCCGcGGGGCgGCGGCagagagcacGuCCuuauCGUCCCUGg -3'
miRNA:   3'- -GGU-CCUCGgCGUCG---------C-GGu---GCAGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 4688 0.7 0.430428
Target:  5'- --cGGGGCgaGUGGCGCCGCGUCCa-- -3'
miRNA:   3'- gguCCUCGg-CGUCGCGGUGCAGGgac -5'
24541 5' -61.8 NC_005264.1 + 5063 0.66 0.65559
Target:  5'- gCAGGGGUCGCaaGGCgGCCAgccCGUCCg-- -3'
miRNA:   3'- gGUCCUCGGCG--UCG-CGGU---GCAGGgac -5'
24541 5' -61.8 NC_005264.1 + 5400 0.67 0.606687
Target:  5'- gCCAGGGGCCaGCAGgGCguaCGCGgcaUCUGu -3'
miRNA:   3'- -GGUCCUCGG-CGUCgCG---GUGCag-GGAC- -5'
24541 5' -61.8 NC_005264.1 + 8306 0.7 0.430428
Target:  5'- aCGGGGgcaccugcGCCGCGGCGUCGCcgucGUCCCc- -3'
miRNA:   3'- gGUCCU--------CGGCGUCGCGGUG----CAGGGac -5'
24541 5' -61.8 NC_005264.1 + 12614 0.73 0.314526
Target:  5'- uCUGGaGGGCCGCAGCcCCcCGUCCCa- -3'
miRNA:   3'- -GGUC-CUCGGCGUCGcGGuGCAGGGac -5'
24541 5' -61.8 NC_005264.1 + 15135 0.66 0.693479
Target:  5'- -gGGGAauggucuGuCUGCAcCGCCGCGUCUCUGg -3'
miRNA:   3'- ggUCCU-------C-GGCGUcGCGGUGCAGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 19227 0.66 0.684782
Target:  5'- gCAGG-GCCgGCAGuUGCUACGUgCCa- -3'
miRNA:   3'- gGUCCuCGG-CGUC-GCGGUGCAgGGac -5'
24541 5' -61.8 NC_005264.1 + 19326 0.66 0.704057
Target:  5'- cCCAGGAaaGCCGgaaGGaCGCCGCGUagCCa- -3'
miRNA:   3'- -GGUCCU--CGGCg--UC-GCGGUGCAg-GGac -5'
24541 5' -61.8 NC_005264.1 + 20253 0.66 0.65559
Target:  5'- gCAGGGGuuGCGGCGCgGCcUCgCg- -3'
miRNA:   3'- gGUCCUCggCGUCGCGgUGcAGgGac -5'
24541 5' -61.8 NC_005264.1 + 20524 0.69 0.520226
Target:  5'- gCCAGGGGCaCGCGuuGCGCC-CGUUgCa- -3'
miRNA:   3'- -GGUCCUCG-GCGU--CGCGGuGCAGgGac -5'
24541 5' -61.8 NC_005264.1 + 30361 0.72 0.357899
Target:  5'- gCAGGAgccccuucggcGCCGCcGCGUCGCGUCUCg- -3'
miRNA:   3'- gGUCCU-----------CGGCGuCGCGGUGCAGGGac -5'
24541 5' -61.8 NC_005264.1 + 30447 0.66 0.65559
Target:  5'- -gGGGAGCCGCGG-GCCcCGgcucggCCCc- -3'
miRNA:   3'- ggUCCUCGGCGUCgCGGuGCa-----GGGac -5'
24541 5' -61.8 NC_005264.1 + 32924 0.73 0.307696
Target:  5'- gCAGGGGUCGCggGGCGCCGCGUgagUCUGu -3'
miRNA:   3'- gGUCCUCGGCG--UCGCGGUGCAg--GGAC- -5'
24541 5' -61.8 NC_005264.1 + 33240 0.66 0.65559
Target:  5'- aCCAGGAaggaacgaggaaGCaGCGGCGaacgcgcgauCCGCGcCCCUGa -3'
miRNA:   3'- -GGUCCU------------CGgCGUCGC----------GGUGCaGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 33928 0.66 0.703098
Target:  5'- gCCAGGcugggaaGGCCGUGGCGCgccgggacCGCG-CCCg- -3'
miRNA:   3'- -GGUCC-------UCGGCGUCGCG--------GUGCaGGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.