miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24541 5' -61.8 NC_005264.1 + 107904 0.67 0.603758
Target:  5'- uUCAGGAGCCacucGCagccguucgccagcAGCGCCGCGaCCUUc -3'
miRNA:   3'- -GGUCCUCGG----CG--------------UCGCGGUGCaGGGAc -5'
24541 5' -61.8 NC_005264.1 + 20524 0.69 0.520226
Target:  5'- gCCAGGGGCaCGCGuuGCGCC-CGUUgCa- -3'
miRNA:   3'- -GGUCCUCG-GCGU--CGCGGuGCAGgGac -5'
24541 5' -61.8 NC_005264.1 + 161222 0.68 0.538153
Target:  5'- --uGGAGCCGCgcccaccGGCGUCcCGuaUCCCUGg -3'
miRNA:   3'- gguCCUCGGCG-------UCGCGGuGC--AGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 89821 0.68 0.574594
Target:  5'- gCUAGuGAccGCCGUggGGCGCCAggagcuuucugcggUGUCCCUGu -3'
miRNA:   3'- -GGUC-CU--CGGCG--UCGCGGU--------------GCAGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 121421 0.68 0.577498
Target:  5'- gCAGGAGCC-CGGCGCCgGCcUgCCUa -3'
miRNA:   3'- gGUCCUCGGcGUCGCGG-UGcAgGGAc -5'
24541 5' -61.8 NC_005264.1 + 122443 0.68 0.577498
Target:  5'- gCGGGGGagggaCGUAGgGCCGCG-CCCg- -3'
miRNA:   3'- gGUCCUCg----GCGUCgCGGUGCaGGGac -5'
24541 5' -61.8 NC_005264.1 + 154610 0.67 0.584286
Target:  5'- -gGGGAGCUGCuGCggcuucggccgaugGCCGCGUCuCCg- -3'
miRNA:   3'- ggUCCUCGGCGuCG--------------CGGUGCAG-GGac -5'
24541 5' -61.8 NC_005264.1 + 106984 0.67 0.5872
Target:  5'- gCCAGGAGCCGCauAGaCGCCugGa----- -3'
miRNA:   3'- -GGUCCUCGGCG--UC-GCGGugCagggac -5'
24541 5' -61.8 NC_005264.1 + 154908 0.67 0.596932
Target:  5'- uCCGGcucgucucGCgGCAGCGUUACGUCCCc- -3'
miRNA:   3'- -GGUCcu------CGgCGUCGCGGUGCAGGGac -5'
24541 5' -61.8 NC_005264.1 + 93846 0.69 0.510885
Target:  5'- aCAGG-GCCGCGG-GCCACuggCCCg- -3'
miRNA:   3'- gGUCCuCGGCGUCgCGGUGca-GGGac -5'
24541 5' -61.8 NC_005264.1 + 155838 0.69 0.501614
Target:  5'- -gAGGAGCCGCcGCggGCCACG-CCgaGg -3'
miRNA:   3'- ggUCCUCGGCGuCG--CGGUGCaGGgaC- -5'
24541 5' -61.8 NC_005264.1 + 104966 0.69 0.492418
Target:  5'- gCCAuG-GCCGcCGGUGCCGcCGUCUCUGg -3'
miRNA:   3'- -GGUcCuCGGC-GUCGCGGU-GCAGGGAC- -5'
24541 5' -61.8 NC_005264.1 + 32924 0.73 0.307696
Target:  5'- gCAGGGGUCGCggGGCGCCGCGUgagUCUGu -3'
miRNA:   3'- gGUCCUCGGCG--UCGCGGUGCAg--GGAC- -5'
24541 5' -61.8 NC_005264.1 + 131641 0.73 0.314526
Target:  5'- uCUGGaGGGCCGCAGCcCCcCGUCCCa- -3'
miRNA:   3'- -GGUC-CUCGGCGUCGcGGuGCAGGGac -5'
24541 5' -61.8 NC_005264.1 + 149388 0.72 0.357899
Target:  5'- gCAGGAgccccuucggcGCCGCcGCGUCGCGUCUCg- -3'
miRNA:   3'- gGUCCU-----------CGGCGuCGCGGUGCAGGGac -5'
24541 5' -61.8 NC_005264.1 + 84150 0.71 0.381105
Target:  5'- cCCGGGAagugGUCGCAGCGCgCGCGccggaCCUGu -3'
miRNA:   3'- -GGUCCU----CGGCGUCGCG-GUGCag---GGAC- -5'
24541 5' -61.8 NC_005264.1 + 123715 0.7 0.430428
Target:  5'- --cGGGGCgaGUGGCGCCGCGUCCa-- -3'
miRNA:   3'- gguCCUCGg-CGUCGCGGUGCAGGgac -5'
24541 5' -61.8 NC_005264.1 + 127333 0.7 0.430428
Target:  5'- aCGGGGgcaccugcGCCGCGGCGUCGCcgucGUCCCc- -3'
miRNA:   3'- gGUCCU--------CGGCGUCGCGGUG----CAGGGac -5'
24541 5' -61.8 NC_005264.1 + 93173 0.7 0.456453
Target:  5'- aCCAa-GGCCcCAGCGCCGCGUgCCCg- -3'
miRNA:   3'- -GGUccUCGGcGUCGCGGUGCA-GGGac -5'
24541 5' -61.8 NC_005264.1 + 83430 0.69 0.4833
Target:  5'- gCUGGGuuccGCCGCGGCcucGCCACG-CCCg- -3'
miRNA:   3'- -GGUCCu---CGGCGUCG---CGGUGCaGGGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.