miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24542 3' -53.3 NC_005264.1 + 8179 0.66 0.976704
Target:  5'- uGCUCa-GGgAGAAuGCUcgaGCAGAaCCCCg -3'
miRNA:   3'- -UGAGcaCCgUCUUuCGA---UGUCU-GGGG- -5'
24542 3' -53.3 NC_005264.1 + 77325 0.66 0.976704
Target:  5'- cGCUCaGUGGaUGGAccGGCgUGCAGACCgCg -3'
miRNA:   3'- -UGAG-CACC-GUCUu-UCG-AUGUCUGGgG- -5'
24542 3' -53.3 NC_005264.1 + 127206 0.66 0.976704
Target:  5'- uGCUCa-GGgAGAAuGCUcgaGCAGAaCCCCg -3'
miRNA:   3'- -UGAGcaCCgUCUUuCGA---UGUCU-GGGG- -5'
24542 3' -53.3 NC_005264.1 + 36185 0.66 0.974127
Target:  5'- uUUCGUGGUugggcGAAAGa-GCAGACCgCa -3'
miRNA:   3'- uGAGCACCGu----CUUUCgaUGUCUGGgG- -5'
24542 3' -53.3 NC_005264.1 + 155212 0.66 0.974127
Target:  5'- uUUCGUGGUugggcGAAAGa-GCAGACCgCa -3'
miRNA:   3'- uGAGCACCGu----CUUUCgaUGUCUGGgG- -5'
24542 3' -53.3 NC_005264.1 + 79402 0.66 0.974127
Target:  5'- cGCgggCGUGGCgAGGccGCgGCGGAaCCCa -3'
miRNA:   3'- -UGa--GCACCG-UCUuuCGaUGUCUgGGG- -5'
24542 3' -53.3 NC_005264.1 + 56844 0.66 0.968363
Target:  5'- gGCUCGUGGCugccAGAuuGCUccuGgGGGCCa- -3'
miRNA:   3'- -UGAGCACCG----UCUuuCGA---UgUCUGGgg -5'
24542 3' -53.3 NC_005264.1 + 40639 0.66 0.965162
Target:  5'- uACUUGUGGCAcuuccuuGGCUGCGcGAgCCUu -3'
miRNA:   3'- -UGAGCACCGUcuu----UCGAUGU-CUgGGG- -5'
24542 3' -53.3 NC_005264.1 + 93695 0.66 0.965162
Target:  5'- uAC-CGUGGCAGu-AGC-GCGGGCCa- -3'
miRNA:   3'- -UGaGCACCGUCuuUCGaUGUCUGGgg -5'
24542 3' -53.3 NC_005264.1 + 12688 0.66 0.965162
Target:  5'- -aUCGUGGCccuGAuuguuuuGGCgugcGCGGGCCCUc -3'
miRNA:   3'- ugAGCACCGu--CUu------UCGa---UGUCUGGGG- -5'
24542 3' -53.3 NC_005264.1 + 151896 0.66 0.965162
Target:  5'- aGCUguaUGUGGCGGAGGGg-ACGGcgGCUCCa -3'
miRNA:   3'- -UGA---GCACCGUCUUUCgaUGUC--UGGGG- -5'
24542 3' -53.3 NC_005264.1 + 146940 0.66 0.963136
Target:  5'- gUUCGUGGCgcagaggcuGGAuggcgcugaggccgcAGGCUGCGGAgCCUc -3'
miRNA:   3'- uGAGCACCG---------UCU---------------UUCGAUGUCUgGGG- -5'
24542 3' -53.3 NC_005264.1 + 28675 0.66 0.961741
Target:  5'- gACUUGUcauGGCGcgccGAGCUACAGAUUCUg -3'
miRNA:   3'- -UGAGCA---CCGUcu--UUCGAUGUCUGGGG- -5'
24542 3' -53.3 NC_005264.1 + 99506 0.67 0.958093
Target:  5'- cACUCGUGGaCAGcuuGGCgggGCuGACCg- -3'
miRNA:   3'- -UGAGCACC-GUCuu-UCGa--UGuCUGGgg -5'
24542 3' -53.3 NC_005264.1 + 44904 0.67 0.958093
Target:  5'- uCUCGUGuagcgcuugaGCAaAAAGCcuaGCGGGCCCCc -3'
miRNA:   3'- uGAGCAC----------CGUcUUUCGa--UGUCUGGGG- -5'
24542 3' -53.3 NC_005264.1 + 27422 0.67 0.958093
Target:  5'- cGCUCGggGGCAuGAugAGGCUuucagcCAGACCUg -3'
miRNA:   3'- -UGAGCa-CCGU-CU--UUCGAu-----GUCUGGGg -5'
24542 3' -53.3 NC_005264.1 + 159377 0.67 0.954214
Target:  5'- -aUCGUGGaugcggcacCGGGcgccacGGGCgGCGGACCCCu -3'
miRNA:   3'- ugAGCACC---------GUCU------UUCGaUGUCUGGGG- -5'
24542 3' -53.3 NC_005264.1 + 14656 0.67 0.954214
Target:  5'- cCUCGcggcaacGGCAGAGAccauGCUGCcgGGGCCCa -3'
miRNA:   3'- uGAGCa------CCGUCUUU----CGAUG--UCUGGGg -5'
24542 3' -53.3 NC_005264.1 + 26123 0.67 0.953813
Target:  5'- gGCUCGUGGCGcggcgccGAGAGaaugGCGaGCCCa -3'
miRNA:   3'- -UGAGCACCGU-------CUUUCga--UGUcUGGGg -5'
24542 3' -53.3 NC_005264.1 + 79913 0.67 0.950099
Target:  5'- uGCgCGUGGCcGAcgucuGCgGCGGACUCCa -3'
miRNA:   3'- -UGaGCACCGuCUuu---CGaUGUCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.