miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24542 5' -57.6 NC_005264.1 + 44889 0.66 0.87559
Target:  5'- gGCGGG--CCCGUCgUCgucuggGGCGGGAGg -3'
miRNA:   3'- -CGCCCuaGGGUAGgAGg-----CCGUUCUCa -5'
24542 5' -57.6 NC_005264.1 + 36267 0.66 0.87559
Target:  5'- aGCGGGuAggCCGUCCUCgugcguaGGCGAGGa- -3'
miRNA:   3'- -CGCCC-UagGGUAGGAGg------CCGUUCUca -5'
24542 5' -57.6 NC_005264.1 + 155294 0.66 0.87559
Target:  5'- aGCGGGuAggCCGUCCUCgugcguaGGCGAGGa- -3'
miRNA:   3'- -CGCCC-UagGGUAGGAGg------CCGUUCUca -5'
24542 5' -57.6 NC_005264.1 + 3309 0.66 0.868394
Target:  5'- cGCGGGAUCgCGcgCCgugcaagCgGaGCGAGAGUa -3'
miRNA:   3'- -CGCCCUAGgGUa-GGa------GgC-CGUUCUCA- -5'
24542 5' -57.6 NC_005264.1 + 125667 0.66 0.860992
Target:  5'- cGCGGGGgcacaugUCCGgaagCUCCGGCA-GAGa -3'
miRNA:   3'- -CGCCCUa------GGGUag--GAGGCCGUuCUCa -5'
24542 5' -57.6 NC_005264.1 + 6640 0.66 0.860992
Target:  5'- cGCGGGGgcacaugUCCGgaagCUCCGGCA-GAGa -3'
miRNA:   3'- -CGCCCUa------GGGUag--GAGGCCGUuCUCa -5'
24542 5' -57.6 NC_005264.1 + 35894 0.68 0.767888
Target:  5'- cGCGGcagcguuacGUCCCcccaguaCUCCGGCGAGAGa -3'
miRNA:   3'- -CGCCc--------UAGGGuag----GAGGCCGUUCUCa -5'
24542 5' -57.6 NC_005264.1 + 106747 0.68 0.758558
Target:  5'- uGCGGGGgagccgccuguuUCCCucGUCCUaCGGCuAGAGg -3'
miRNA:   3'- -CGCCCU------------AGGG--UAGGAgGCCGuUCUCa -5'
24542 5' -57.6 NC_005264.1 + 87098 0.69 0.690717
Target:  5'- cGCGGGuaacgcaCCCAgacuggCCUCCGGCGcccgcGGGGc -3'
miRNA:   3'- -CGCCCua-----GGGUa-----GGAGGCCGU-----UCUCa -5'
24542 5' -57.6 NC_005264.1 + 54447 0.7 0.630605
Target:  5'- cGCGGGGgaugCCCAccgCCgagCUGGUAAGGGc -3'
miRNA:   3'- -CGCCCUa---GGGUa--GGa--GGCCGUUCUCa -5'
24542 5' -57.6 NC_005264.1 + 72469 0.73 0.474243
Target:  5'- -aGGGAUCgCAaCCuaUCCGGCAAGGGa -3'
miRNA:   3'- cgCCCUAGgGUaGG--AGGCCGUUCUCa -5'
24542 5' -57.6 NC_005264.1 + 67942 0.74 0.438019
Target:  5'- aGCGGGGuUCCCGgcgCCUgCGGCucGAGa -3'
miRNA:   3'- -CGCCCU-AGGGUa--GGAgGCCGuuCUCa -5'
24542 5' -57.6 NC_005264.1 + 157387 0.76 0.33969
Target:  5'- gGCGGGGcgguuaggaCC-UCCUCCGGCGAGAGc -3'
miRNA:   3'- -CGCCCUag-------GGuAGGAGGCCGUUCUCa -5'
24542 5' -57.6 NC_005264.1 + 38360 0.76 0.33969
Target:  5'- gGCGGGGcgguuaggaCC-UCCUCCGGCGAGAGc -3'
miRNA:   3'- -CGCCCUag-------GGuAGGAGGCCGUUCUCa -5'
24542 5' -57.6 NC_005264.1 + 120944 1.08 0.002559
Target:  5'- uGCGGGAUCCCAUCCUCCGGCAAGAGUc -3'
miRNA:   3'- -CGCCCUAGGGUAGGAGGCCGUUCUCA- -5'
24542 5' -57.6 NC_005264.1 + 1918 1.08 0.002559
Target:  5'- uGCGGGAUCCCAUCCUCCGGCAAGAGUc -3'
miRNA:   3'- -CGCCCUAGGGUAGGAGGCCGUUCUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.