miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24543 3' -60.8 NC_005264.1 + 1330 1.06 0.001661
Target:  5'- aAACCCAGCGAGCGGGGACACGCAGACc -3'
miRNA:   3'- -UUGGGUCGCUCGCCCCUGUGCGUCUG- -5'
24543 3' -60.8 NC_005264.1 + 3611 0.66 0.697236
Target:  5'- cGCCgCGGgGGGCcgcgagGGcGGGCGCGCuGACa -3'
miRNA:   3'- uUGG-GUCgCUCG------CC-CCUGUGCGuCUG- -5'
24543 3' -60.8 NC_005264.1 + 5108 0.69 0.528909
Target:  5'- cGCCUgggGGCGAGCuGGGACcuACGUAGGa -3'
miRNA:   3'- uUGGG---UCGCUCGcCCCUG--UGCGUCUg -5'
24543 3' -60.8 NC_005264.1 + 5301 0.71 0.385691
Target:  5'- uGACCCGugGGGCGGGcGACugGCGGGa -3'
miRNA:   3'- -UUGGGUcgCUCGCCC-CUGugCGUCUg -5'
24543 3' -60.8 NC_005264.1 + 8179 0.68 0.538579
Target:  5'- uGCUCAGggagaaugcuCGAGCagaaccccGGGGACACGgAGACg -3'
miRNA:   3'- uUGGGUC----------GCUCG--------CCCCUGUGCgUCUG- -5'
24543 3' -60.8 NC_005264.1 + 14042 0.65 0.713869
Target:  5'- -gUCCGGaCGuGGCGGGGccgggugggaacguGCACGcCAGACu -3'
miRNA:   3'- uuGGGUC-GC-UCGCCCC--------------UGUGC-GUCUG- -5'
24543 3' -60.8 NC_005264.1 + 16482 0.68 0.558092
Target:  5'- cAGCCgCGGUGGccuGCGGGGuCgaggcacgccgGCGCAGACg -3'
miRNA:   3'- -UUGG-GUCGCU---CGCCCCuG-----------UGCGUCUG- -5'
24543 3' -60.8 NC_005264.1 + 16763 0.69 0.481626
Target:  5'- aGACCC-GC--GCGGGGGCGCGCuguucgggccGGACg -3'
miRNA:   3'- -UUGGGuCGcuCGCCCCUGUGCG----------UCUG- -5'
24543 3' -60.8 NC_005264.1 + 18059 0.71 0.410601
Target:  5'- cGGCgCC-GCGAGCcaGGGCGCGCGGGCa -3'
miRNA:   3'- -UUG-GGuCGCUCGccCCUGUGCGUCUG- -5'
24543 3' -60.8 NC_005264.1 + 22830 0.67 0.597655
Target:  5'- cAGCCuCAGCGAGaCGGGuacgGACGgGCgAGGCc -3'
miRNA:   3'- -UUGG-GUCGCUC-GCCC----CUGUgCG-UCUG- -5'
24543 3' -60.8 NC_005264.1 + 25203 0.66 0.707041
Target:  5'- cGCCCugugucuGuCGAGCGGGGAgagcgacaCGCGCAaGAa -3'
miRNA:   3'- uUGGGu------C-GCUCGCCCCU--------GUGCGU-CUg -5'
24543 3' -60.8 NC_005264.1 + 25903 0.68 0.557111
Target:  5'- uGCCCcaGGCGAacagaugGCgGGGGGCGCuguaGCGGACg -3'
miRNA:   3'- uUGGG--UCGCU-------CG-CCCCUGUG----CGUCUG- -5'
24543 3' -60.8 NC_005264.1 + 30607 0.72 0.338956
Target:  5'- cAGCCCGGCGAcgGCGGcGGcgacggauccGCGCGCAGcGCg -3'
miRNA:   3'- -UUGGGUCGCU--CGCC-CC----------UGUGCGUC-UG- -5'
24543 3' -60.8 NC_005264.1 + 30869 0.66 0.670527
Target:  5'- cGCCCGGUaGGCaacggcgucucgaucGGGGACGCGUcgggggaGGACu -3'
miRNA:   3'- uUGGGUCGcUCG---------------CCCCUGUGCG-------UCUG- -5'
24543 3' -60.8 NC_005264.1 + 31038 0.66 0.697236
Target:  5'- cGCCUAGCGGucguGCGGcugcguugcGGACG-GCAGGCg -3'
miRNA:   3'- uUGGGUCGCU----CGCC---------CCUGUgCGUCUG- -5'
24543 3' -60.8 NC_005264.1 + 35751 0.67 0.626603
Target:  5'- uGCCCGacugcggccGCGAcgugggugaagagGCGGaGGGCGCGguGGCg -3'
miRNA:   3'- uUGGGU---------CGCU-------------CGCC-CCUGUGCguCUG- -5'
24543 3' -60.8 NC_005264.1 + 37785 0.66 0.706063
Target:  5'- gGACUCgaGGCGAGCGGcGGagaagagGCGCGCcgccGACg -3'
miRNA:   3'- -UUGGG--UCGCUCGCC-CC-------UGUGCGu---CUG- -5'
24543 3' -60.8 NC_005264.1 + 38794 0.66 0.707041
Target:  5'- -uCCCGGUGAcguacuccGCGGcGACcccgGCGCGGACg -3'
miRNA:   3'- uuGGGUCGCU--------CGCCcCUG----UGCGUCUG- -5'
24543 3' -60.8 NC_005264.1 + 41235 0.66 0.697236
Target:  5'- aGACCUcGCGGGCGGaGGACucugaAGACu -3'
miRNA:   3'- -UUGGGuCGCUCGCC-CCUGugcg-UCUG- -5'
24543 3' -60.8 NC_005264.1 + 42442 0.67 0.597655
Target:  5'- gGAUCC-GCGAaaagGGGGugACGUAGACa -3'
miRNA:   3'- -UUGGGuCGCUcg--CCCCugUGCGUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.