miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24543 5' -52.7 NC_005264.1 + 56380 0.66 0.98832
Target:  5'- --uUUUGCGUCugCCCUgaggCGCGa -3'
miRNA:   3'- cacAGAUGCAGugGGGGaaaaGCGCc -5'
24543 5' -52.7 NC_005264.1 + 42480 0.66 0.981272
Target:  5'- -gGUCUGCGUguCCCCgc--UCGCuGGg -3'
miRNA:   3'- caCAGAUGCAguGGGGgaaaAGCG-CC- -5'
24543 5' -52.7 NC_005264.1 + 161507 0.66 0.981272
Target:  5'- -gGUCUGCGUguCCCCgc--UCGCuGGg -3'
miRNA:   3'- caCAGAUGCAguGGGGgaaaAGCG-CC- -5'
24543 5' -52.7 NC_005264.1 + 60033 0.66 0.979095
Target:  5'- --cUCUACG-C-CCCUCUcaUCGCGGg -3'
miRNA:   3'- cacAGAUGCaGuGGGGGAaaAGCGCC- -5'
24543 5' -52.7 NC_005264.1 + 159218 0.67 0.974186
Target:  5'- aUGUCaGCG-CGCCCgCCc--UCGCGGc -3'
miRNA:   3'- cACAGaUGCaGUGGG-GGaaaAGCGCC- -5'
24543 5' -52.7 NC_005264.1 + 40191 0.67 0.974186
Target:  5'- aUGUCaGCG-CGCCCgCCc--UCGCGGc -3'
miRNA:   3'- cACAGaUGCaGUGGG-GGaaaAGCGCC- -5'
24543 5' -52.7 NC_005264.1 + 157834 0.67 0.97392
Target:  5'- --cUCUGCGcaaacCGCUCCCUUcgcugucUUCGCGGc -3'
miRNA:   3'- cacAGAUGCa----GUGGGGGAA-------AAGCGCC- -5'
24543 5' -52.7 NC_005264.1 + 146364 0.67 0.97144
Target:  5'- uGUGaCU-CGUCGCCCCCcag-CGCuGGu -3'
miRNA:   3'- -CACaGAuGCAGUGGGGGaaaaGCG-CC- -5'
24543 5' -52.7 NC_005264.1 + 82041 0.67 0.97144
Target:  5'- -gGUCUACGaugcgcaggcgCGCCUCCUcuagagCGCGGa -3'
miRNA:   3'- caCAGAUGCa----------GUGGGGGAaaa---GCGCC- -5'
24543 5' -52.7 NC_005264.1 + 22563 0.67 0.968489
Target:  5'- -cGUUaaaacugGCGUUGCCCCCUggaaGCGGc -3'
miRNA:   3'- caCAGa------UGCAGUGGGGGAaaagCGCC- -5'
24543 5' -52.7 NC_005264.1 + 95486 0.68 0.954526
Target:  5'- -gGgcgCUACGUUuuCCgCCCUcUUCGCGGc -3'
miRNA:   3'- caCa--GAUGCAGu-GG-GGGAaAAGCGCC- -5'
24543 5' -52.7 NC_005264.1 + 29540 0.68 0.946177
Target:  5'- -cGUCUcucgcaGCGUCACCgCCCUUUuguuuaUCGCc- -3'
miRNA:   3'- caCAGA------UGCAGUGG-GGGAAA------AGCGcc -5'
24543 5' -52.7 NC_005264.1 + 116001 0.68 0.946177
Target:  5'- -cGUgUGCGUCGCCCUCUg-UCG-GGu -3'
miRNA:   3'- caCAgAUGCAGUGGGGGAaaAGCgCC- -5'
24543 5' -52.7 NC_005264.1 + 139890 0.69 0.931355
Target:  5'- -cGUCUaagggccaaucgcACGUCACCCauggucuuCCUcUUUGCGGg -3'
miRNA:   3'- caCAGA-------------UGCAGUGGG--------GGAaAAGCGCC- -5'
24543 5' -52.7 NC_005264.1 + 110745 0.69 0.92112
Target:  5'- aUGUCUgACGUCGCCCUCaag-CGCa- -3'
miRNA:   3'- cACAGA-UGCAGUGGGGGaaaaGCGcc -5'
24543 5' -52.7 NC_005264.1 + 38852 0.69 0.92112
Target:  5'- cGUGcCUACGUCGCggagCUCC---UCGCGGg -3'
miRNA:   3'- -CACaGAUGCAGUG----GGGGaaaAGCGCC- -5'
24543 5' -52.7 NC_005264.1 + 146063 0.7 0.917706
Target:  5'- ---aCUGCGUCcggcccgaacagcgcGCCCCCg---CGCGGg -3'
miRNA:   3'- cacaGAUGCAG---------------UGGGGGaaaaGCGCC- -5'
24543 5' -52.7 NC_005264.1 + 118954 0.7 0.903182
Target:  5'- -cGUCUcCGgCGCCCCCUUUgcCGCGc -3'
miRNA:   3'- caCAGAuGCaGUGGGGGAAAa-GCGCc -5'
24543 5' -52.7 NC_005264.1 + 51059 0.7 0.894743
Target:  5'- uUGUCgACGUCGCCUcuaggccgccuagaCCUgcUUCGCGGu -3'
miRNA:   3'- cACAGaUGCAGUGGG--------------GGAa-AAGCGCC- -5'
24543 5' -52.7 NC_005264.1 + 103047 0.7 0.890035
Target:  5'- gGUGcgCUACG-CGCCCCCU----GCGGg -3'
miRNA:   3'- -CACa-GAUGCaGUGGGGGAaaagCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.