miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24544 5' -56.6 NC_005264.1 + 40638 0.66 0.905713
Target:  5'- uCCCCGCGCcgucGCGAcgcgGAGGgucgccgUUUCgGUUGCc -3'
miRNA:   3'- -GGGGCGCG----CGCU----CUCC-------AAAGaCGAUG- -5'
24544 5' -56.6 NC_005264.1 + 66192 0.66 0.900109
Target:  5'- aCgCCGCGCGCGAc-GGUUUUgaacuUGCcGCa -3'
miRNA:   3'- -GgGGCGCGCGCUcuCCAAAG-----ACGaUG- -5'
24544 5' -56.6 NC_005264.1 + 159665 0.66 0.893009
Target:  5'- uCCCCGCgccgucGCGCGcGGAGGgucgccgUUUCgGUUGCc -3'
miRNA:   3'- -GGGGCG------CGCGC-UCUCC-------AAAGaCGAUG- -5'
24544 5' -56.6 NC_005264.1 + 155719 0.66 0.88564
Target:  5'- uCUUCGCgaaagugaacGCGCGGGGGGUUauggugggccgcCUGCUACc -3'
miRNA:   3'- -GGGGCG----------CGCGCUCUCCAAa-----------GACGAUG- -5'
24544 5' -56.6 NC_005264.1 + 86552 0.67 0.873012
Target:  5'- cCCCCGCGC-CcAGAuGGUggaauUUCUGaCUGCc -3'
miRNA:   3'- -GGGGCGCGcGcUCU-CCA-----AAGAC-GAUG- -5'
24544 5' -56.6 NC_005264.1 + 41237 0.67 0.865699
Target:  5'- aCCUCGCGgGCG-GAGGacUCUGaagACu -3'
miRNA:   3'- -GGGGCGCgCGCuCUCCaaAGACga-UG- -5'
24544 5' -56.6 NC_005264.1 + 160264 0.67 0.865699
Target:  5'- aCCUCGCGgGCG-GAGGacUCUGaagACu -3'
miRNA:   3'- -GGGGCGCgCGCuCUCCaaAGACga-UG- -5'
24544 5' -56.6 NC_005264.1 + 127322 0.67 0.842551
Target:  5'- gCCCGUGgGCGAcGGGGgcacCUGCgccGCg -3'
miRNA:   3'- gGGGCGCgCGCU-CUCCaaa-GACGa--UG- -5'
24544 5' -56.6 NC_005264.1 + 8295 0.67 0.842551
Target:  5'- gCCCGUGgGCGAcGGGGgcacCUGCgccGCg -3'
miRNA:   3'- gGGGCGCgCGCU-CUCCaaa-GACGa--UG- -5'
24544 5' -56.6 NC_005264.1 + 42066 0.67 0.842551
Target:  5'- gCCCGCgGCGCGu--GGcgUCaGCUGCg -3'
miRNA:   3'- gGGGCG-CGCGCucuCCaaAGaCGAUG- -5'
24544 5' -56.6 NC_005264.1 + 160939 0.68 0.834453
Target:  5'- aUCCCGCaGuCGCGGcGGGGUcuguagcuUUCUGCcACg -3'
miRNA:   3'- -GGGGCG-C-GCGCU-CUCCA--------AAGACGaUG- -5'
24544 5' -56.6 NC_005264.1 + 86152 0.68 0.826175
Target:  5'- gCUCCGCGCcaagcuggGC-AGAGGUaucUUCUGCcGCa -3'
miRNA:   3'- -GGGGCGCG--------CGcUCUCCA---AAGACGaUG- -5'
24544 5' -56.6 NC_005264.1 + 67627 0.68 0.826175
Target:  5'- gCCaCGCGgGCGcAGGGGUgucCUGCgcgGCc -3'
miRNA:   3'- gGG-GCGCgCGC-UCUCCAaa-GACGa--UG- -5'
24544 5' -56.6 NC_005264.1 + 1002 0.68 0.81687
Target:  5'- gCCCCGCGCccgugugGUGGGGGGgcaggggccgUUCUGUa-- -3'
miRNA:   3'- -GGGGCGCG-------CGCUCUCCa---------AAGACGaug -5'
24544 5' -56.6 NC_005264.1 + 25149 0.68 0.809109
Target:  5'- uCCUCGCGCGCGuuugcggcaGGGGGUg---GCgggGCa -3'
miRNA:   3'- -GGGGCGCGCGC---------UCUCCAaagaCGa--UG- -5'
24544 5' -56.6 NC_005264.1 + 39570 0.68 0.800337
Target:  5'- cCCCCGCGgGCccaGAGAGua---UGCUGCc -3'
miRNA:   3'- -GGGGCGCgCG---CUCUCcaaagACGAUG- -5'
24544 5' -56.6 NC_005264.1 + 84464 0.68 0.791416
Target:  5'- -gCCGCGUGCaucGGGUgcggCUGCUACg -3'
miRNA:   3'- ggGGCGCGCGcucUCCAaa--GACGAUG- -5'
24544 5' -56.6 NC_005264.1 + 161721 0.69 0.773161
Target:  5'- gUCCGUcagagagagagaGCGCGAGAGGUaga-GCUGCg -3'
miRNA:   3'- gGGGCG------------CGCGCUCUCCAaagaCGAUG- -5'
24544 5' -56.6 NC_005264.1 + 42695 0.69 0.773161
Target:  5'- gUCCGUcagagagagagaGCGCGAGAGGUaga-GCUGCg -3'
miRNA:   3'- gGGGCG------------CGCGCUCUCCAaagaCGAUG- -5'
24544 5' -56.6 NC_005264.1 + 3824 0.69 0.763845
Target:  5'- uCCCUGCGCGCG-GAGac--CUGCUccugGCa -3'
miRNA:   3'- -GGGGCGCGCGCuCUCcaaaGACGA----UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.