miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24545 3' -57 NC_005264.1 + 150928 0.66 0.910695
Target:  5'- cGACCGUGggaaaAUCUGCGGgcauuuucccacggcCCUCGCggcuCGGCu -3'
miRNA:   3'- -CUGGCAUg----UGGAUGCU---------------GGAGCG----GCCG- -5'
24545 3' -57 NC_005264.1 + 96205 0.66 0.908327
Target:  5'- -gUCGUAUuggcagcuuGCCUcgggccGCGACggCGCCGGCa -3'
miRNA:   3'- cuGGCAUG---------UGGA------UGCUGgaGCGGCCG- -5'
24545 3' -57 NC_005264.1 + 98696 0.66 0.908327
Target:  5'- cGGCCGgaucgcgGCGCCgugGCGAgCCUgaUCGGCg -3'
miRNA:   3'- -CUGGCa------UGUGGa--UGCU-GGAgcGGCCG- -5'
24545 3' -57 NC_005264.1 + 42552 0.66 0.908327
Target:  5'- cGCgCGUcuucGCGCCgGCaGCCUUGCCGGa -3'
miRNA:   3'- cUG-GCA----UGUGGaUGcUGGAGCGGCCg -5'
24545 3' -57 NC_005264.1 + 118043 0.66 0.908327
Target:  5'- ---gGUuuGCCgcgGCGACCgcggCGUCGGCa -3'
miRNA:   3'- cuggCAugUGGa--UGCUGGa---GCGGCCG- -5'
24545 3' -57 NC_005264.1 + 29935 0.66 0.908327
Target:  5'- ---gGUACGCgCUGCG-CCUaGCCGGUc -3'
miRNA:   3'- cuggCAUGUG-GAUGCuGGAgCGGCCG- -5'
24545 3' -57 NC_005264.1 + 87033 0.66 0.908327
Target:  5'- cACCGcGCGCCUacggacggcgACGACCUgGa-GGCg -3'
miRNA:   3'- cUGGCaUGUGGA----------UGCUGGAgCggCCG- -5'
24545 3' -57 NC_005264.1 + 57700 0.66 0.908327
Target:  5'- cGACCGcgGCAUacaGCG-CUUCGuuGGCg -3'
miRNA:   3'- -CUGGCa-UGUGga-UGCuGGAGCggCCG- -5'
24545 3' -57 NC_005264.1 + 68141 0.66 0.908327
Target:  5'- cGCCGUugACC-ACGGCCguuaugugaaCGUugCGGCg -3'
miRNA:   3'- cUGGCAugUGGaUGCUGGa---------GCG--GCCG- -5'
24545 3' -57 NC_005264.1 + 41881 0.66 0.902248
Target:  5'- cGGCCGcGCACa---GACuCUUGCCGGa -3'
miRNA:   3'- -CUGGCaUGUGgaugCUG-GAGCGGCCg -5'
24545 3' -57 NC_005264.1 + 62642 0.66 0.902248
Target:  5'- cGCCGUccaaGCGCagcacGCGACCgaacUCGuuGGCg -3'
miRNA:   3'- cUGGCA----UGUGga---UGCUGG----AGCggCCG- -5'
24545 3' -57 NC_005264.1 + 35051 0.66 0.902248
Target:  5'- cGCCGUuCGCCUcuccccagagagGCGAuucgguCCUCcCCGGCu -3'
miRNA:   3'- cUGGCAuGUGGA------------UGCU------GGAGcGGCCG- -5'
24545 3' -57 NC_005264.1 + 122547 0.66 0.902248
Target:  5'- cGCCGUcCGCCUcgucgaaccGCGACg-CGgCGGCg -3'
miRNA:   3'- cUGGCAuGUGGA---------UGCUGgaGCgGCCG- -5'
24545 3' -57 NC_005264.1 + 77349 0.66 0.902248
Target:  5'- aGACCGcguCACCUcuuGCGACaUC-CUGGCa -3'
miRNA:   3'- -CUGGCau-GUGGA---UGCUGgAGcGGCCG- -5'
24545 3' -57 NC_005264.1 + 154078 0.66 0.902248
Target:  5'- cGCCGUuCGCCUcuccccagagagGCGAuucgguCCUCcCCGGCu -3'
miRNA:   3'- cUGGCAuGUGGA------------UGCU------GGAGcGGCCG- -5'
24545 3' -57 NC_005264.1 + 160907 0.66 0.902248
Target:  5'- cGGCCGcGCACa---GACuCUUGCCGGa -3'
miRNA:   3'- -CUGGCaUGUGgaugCUG-GAGCGGCCg -5'
24545 3' -57 NC_005264.1 + 3520 0.66 0.902248
Target:  5'- cGCCGUcCGCCUcgucgaaccGCGACg-CGgCGGCg -3'
miRNA:   3'- cUGGCAuGUGGA---------UGCUGgaGCgGCCG- -5'
24545 3' -57 NC_005264.1 + 149709 0.66 0.902248
Target:  5'- aGACCGUAUccCCUagaaGCGcuuGCUguaguggCGCCGGCg -3'
miRNA:   3'- -CUGGCAUGu-GGA----UGC---UGGa------GCGGCCG- -5'
24545 3' -57 NC_005264.1 + 86485 0.66 0.902248
Target:  5'- uACCaacGCGCCUGCGcGCagUCGCCGcGCg -3'
miRNA:   3'- cUGGca-UGUGGAUGC-UGg-AGCGGC-CG- -5'
24545 3' -57 NC_005264.1 + 79711 0.66 0.901627
Target:  5'- gGGCagacGCGCCUccGCGGCCUuggcgccCGUCGGCg -3'
miRNA:   3'- -CUGgca-UGUGGA--UGCUGGA-------GCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.