miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24545 3' -57 NC_005264.1 + 170 1.12 0.001751
Target:  5'- cGACCGUACACCUACGACCUCGCCGGCg -3'
miRNA:   3'- -CUGGCAUGUGGAUGCUGGAGCGGCCG- -5'
24545 3' -57 NC_005264.1 + 1453 0.66 0.882682
Target:  5'- aGCCa-GCACC---GGCCaUCGCCGGCg -3'
miRNA:   3'- cUGGcaUGUGGaugCUGG-AGCGGCCG- -5'
24545 3' -57 NC_005264.1 + 1805 0.67 0.861202
Target:  5'- aGAuCCGUAUACUaua---CUCGCCGGCa -3'
miRNA:   3'- -CU-GGCAUGUGGaugcugGAGCGGCCG- -5'
24545 3' -57 NC_005264.1 + 2382 0.68 0.786779
Target:  5'- uGGCCGU-CGCCcGCaggaGCCcggCGCCGGCc -3'
miRNA:   3'- -CUGGCAuGUGGaUGc---UGGa--GCGGCCG- -5'
24545 3' -57 NC_005264.1 + 3520 0.66 0.902248
Target:  5'- cGCCGUcCGCCUcgucgaaccGCGACg-CGgCGGCg -3'
miRNA:   3'- cUGGCAuGUGGA---------UGCUGgaGCgGCCG- -5'
24545 3' -57 NC_005264.1 + 4080 0.67 0.853638
Target:  5'- gGGCUGuUGCACggGCGGCgUCG-CGGCa -3'
miRNA:   3'- -CUGGC-AUGUGgaUGCUGgAGCgGCCG- -5'
24545 3' -57 NC_005264.1 + 5900 0.66 0.895945
Target:  5'- aGGuaGUACGCCUcgGCGGagaCUCGCgaGGCg -3'
miRNA:   3'- -CUggCAUGUGGA--UGCUg--GAGCGg-CCG- -5'
24545 3' -57 NC_005264.1 + 6426 0.74 0.494711
Target:  5'- --aCGUACACUcucgcgGCGGCgUCGCUGGCg -3'
miRNA:   3'- cugGCAUGUGGa-----UGCUGgAGCGGCCG- -5'
24545 3' -57 NC_005264.1 + 6640 0.67 0.853638
Target:  5'- gGACC-UGCGCCc-CGACauauaGCCGGCg -3'
miRNA:   3'- -CUGGcAUGUGGauGCUGgag--CGGCCG- -5'
24545 3' -57 NC_005264.1 + 8290 0.7 0.691784
Target:  5'- aGGCCGgggAgAUCcGCGuGCCaUCGCCGGCa -3'
miRNA:   3'- -CUGGCa--UgUGGaUGC-UGG-AGCGGCCG- -5'
24545 3' -57 NC_005264.1 + 8304 0.67 0.845883
Target:  5'- cGACgGggGCACCUgcgccGCGGCgUCGCCGuCg -3'
miRNA:   3'- -CUGgCa-UGUGGA-----UGCUGgAGCGGCcG- -5'
24545 3' -57 NC_005264.1 + 11997 0.7 0.681881
Target:  5'- cGGCagaGUACGCgUcACGACCUgCGgCGGCg -3'
miRNA:   3'- -CUGg--CAUGUGgA-UGCUGGA-GCgGCCG- -5'
24545 3' -57 NC_005264.1 + 13549 0.74 0.504145
Target:  5'- aACCaGUGCGCCaaccugguuaaGCGACuCUCGCUGGCa -3'
miRNA:   3'- cUGG-CAUGUGGa----------UGCUG-GAGCGGCCG- -5'
24545 3' -57 NC_005264.1 + 14876 0.66 0.882682
Target:  5'- gGugCGguaauaGCACUUugucugACGACCcuUCGCCGGUc -3'
miRNA:   3'- -CugGCa-----UGUGGA------UGCUGG--AGCGGCCG- -5'
24545 3' -57 NC_005264.1 + 15252 0.7 0.692772
Target:  5'- -uCUGcaUGCGCCUGCGACCguuccccgucgcacaCGUCGGCg -3'
miRNA:   3'- cuGGC--AUGUGGAUGCUGGa--------------GCGGCCG- -5'
24545 3' -57 NC_005264.1 + 16852 0.71 0.661966
Target:  5'- cGCCGUAgAggcCCUcguUGACCUUGUCGGCg -3'
miRNA:   3'- cUGGCAUgU---GGAu--GCUGGAGCGGCCG- -5'
24545 3' -57 NC_005264.1 + 20282 0.7 0.711438
Target:  5'- gGACCGUcugcGCGCUUGCGGCCcCGaggGGCu -3'
miRNA:   3'- -CUGGCA----UGUGGAUGCUGGaGCgg-CCG- -5'
24545 3' -57 NC_005264.1 + 21173 0.76 0.364713
Target:  5'- aGugUGguuugAUACCUACGugCUgGCCGGCc -3'
miRNA:   3'- -CugGCa----UGUGGAUGCugGAgCGGCCG- -5'
24545 3' -57 NC_005264.1 + 22048 0.7 0.711438
Target:  5'- aGACCG-ACGCCUugGacgguagcGCCgcCGCCGGa -3'
miRNA:   3'- -CUGGCaUGUGGAugC--------UGGa-GCGGCCg -5'
24545 3' -57 NC_005264.1 + 25546 0.68 0.821526
Target:  5'- uGCCGUACGCCcGCGucGCCgccaaCGCC-GCg -3'
miRNA:   3'- cUGGCAUGUGGaUGC--UGGa----GCGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.