miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24545 5' -54.7 NC_005264.1 + 54357 0.66 0.950469
Target:  5'- cGAGCCUUaGAAgcGUCGcgcGGCCaCCgGAUCc -3'
miRNA:   3'- -CUCGGAG-CUU--UAGCa--UCGG-GGgCUAG- -5'
24545 5' -54.7 NC_005264.1 + 129025 0.66 0.946178
Target:  5'- cGAGcCCUCGAcGAgcccCGUAGCCCgcgCCGuUCg -3'
miRNA:   3'- -CUC-GGAGCU-UUa---GCAUCGGG---GGCuAG- -5'
24545 5' -54.7 NC_005264.1 + 54698 0.66 0.946178
Target:  5'- cGAGgCUCGA---CGgc-CCCCCGAUCc -3'
miRNA:   3'- -CUCgGAGCUuuaGCaucGGGGGCUAG- -5'
24545 5' -54.7 NC_005264.1 + 9998 0.66 0.946178
Target:  5'- cGAGcCCUCGAcGAgcccCGUAGCCCgcgCCGuUCg -3'
miRNA:   3'- -CUC-GGAGCU-UUa---GCAUCGGG---GGCuAG- -5'
24545 5' -54.7 NC_005264.1 + 69091 0.66 0.946178
Target:  5'- --aUCUCGcgGUCGUGGCCUCUaGGUCc -3'
miRNA:   3'- cucGGAGCuuUAGCAUCGGGGG-CUAG- -5'
24545 5' -54.7 NC_005264.1 + 76397 0.66 0.941649
Target:  5'- -cGCCUCGAGggCGUGGCacauagggcgCCCGGc- -3'
miRNA:   3'- cuCGGAGCUUuaGCAUCGg---------GGGCUag -5'
24545 5' -54.7 NC_005264.1 + 40058 0.66 0.941649
Target:  5'- uGGUUUCGAGGUCGcgGGCCugguaCCCGAg- -3'
miRNA:   3'- cUCGGAGCUUUAGCa-UCGG-----GGGCUag -5'
24545 5' -54.7 NC_005264.1 + 23964 0.66 0.941649
Target:  5'- -cGCCgaCGAAAUgGUcGUCUCCGAUCc -3'
miRNA:   3'- cuCGGa-GCUUUAgCAuCGGGGGCUAG- -5'
24545 5' -54.7 NC_005264.1 + 99258 0.66 0.931869
Target:  5'- aGAGCCaUCG---UCGauGCCCCCGAg- -3'
miRNA:   3'- -CUCGG-AGCuuuAGCauCGGGGGCUag -5'
24545 5' -54.7 NC_005264.1 + 70870 0.66 0.931869
Target:  5'- -uGCCagcUCGGAGUUucccucGGCCCCUGGUCa -3'
miRNA:   3'- cuCGG---AGCUUUAGca----UCGGGGGCUAG- -5'
24545 5' -54.7 NC_005264.1 + 108158 0.67 0.915382
Target:  5'- cGAGCCUCGcgGggagCGUAaugauGUCCCCaGUCg -3'
miRNA:   3'- -CUCGGAGCuuUa---GCAU-----CGGGGGcUAG- -5'
24545 5' -54.7 NC_005264.1 + 129561 0.67 0.909402
Target:  5'- -cGCCgCGugGUCGUGGCa-CCGAUCu -3'
miRNA:   3'- cuCGGaGCuuUAGCAUCGggGGCUAG- -5'
24545 5' -54.7 NC_005264.1 + 152927 0.68 0.890035
Target:  5'- aAGCC-CGcAGUCGcgAGUCCCCGAa- -3'
miRNA:   3'- cUCGGaGCuUUAGCa-UCGGGGGCUag -5'
24545 5' -54.7 NC_005264.1 + 87495 0.68 0.890035
Target:  5'- aAGCuuCUCGAGcAUCGUugcGGCUCCgCGAUCg -3'
miRNA:   3'- cUCG--GAGCUU-UAGCA---UCGGGG-GCUAG- -5'
24545 5' -54.7 NC_005264.1 + 61128 0.68 0.890035
Target:  5'- aGGGUCUUGAGGUuccUGgacAGCUCCUGAUCg -3'
miRNA:   3'- -CUCGGAGCUUUA---GCa--UCGGGGGCUAG- -5'
24545 5' -54.7 NC_005264.1 + 139520 0.68 0.875967
Target:  5'- uGGCCgCGAuGUUGUGGCCCgCCGcacUCg -3'
miRNA:   3'- cUCGGaGCUuUAGCAUCGGG-GGCu--AG- -5'
24545 5' -54.7 NC_005264.1 + 12912 0.68 0.864073
Target:  5'- cGGCCUCGcAGUCcucccccgacgcGUCCCCGAUCg -3'
miRNA:   3'- cUCGGAGCuUUAGcau---------CGGGGGCUAG- -5'
24545 5' -54.7 NC_005264.1 + 131938 0.68 0.864073
Target:  5'- cGGCCUCGcAGUCcucccccgacgcGUCCCCGAUCg -3'
miRNA:   3'- cUCGGAGCuUUAGcau---------CGGGGGCUAG- -5'
24545 5' -54.7 NC_005264.1 + 151858 0.69 0.85322
Target:  5'- aAGCgCUCGGGAcCGacgaUAGCCCCCGugcuUCg -3'
miRNA:   3'- cUCG-GAGCUUUaGC----AUCGGGGGCu---AG- -5'
24545 5' -54.7 NC_005264.1 + 32832 0.69 0.85322
Target:  5'- aAGCgCUCGGGAcCGacgaUAGCCCCCGugcuUCg -3'
miRNA:   3'- cUCG-GAGCUUUaGC----AUCGGGGGCu---AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.