miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24546 3' -53.8 NC_005264.1 + 58213 0.67 0.948133
Target:  5'- aCGaGCG-GGCgCCGCaCGAcgGCCUGUCCg -3'
miRNA:   3'- -GCaCGUaUUG-GGCGcGCU--UGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 101920 0.67 0.948133
Target:  5'- gCGUggGCGUGGCaaguguUCGUGCuGAugCUGUCCu -3'
miRNA:   3'- -GCA--CGUAUUG------GGCGCG-CUugGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 51774 0.67 0.952292
Target:  5'- -aUGCAaucGCCCgGCGCGAACUUGg-- -3'
miRNA:   3'- gcACGUau-UGGG-CGCGCUUGGACagg -5'
24546 3' -53.8 NC_005264.1 + 30290 0.67 0.952292
Target:  5'- --cGCGccGCCCGCaucucgacucGCGAuUCUGUCCg -3'
miRNA:   3'- gcaCGUauUGGGCG----------CGCUuGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 98460 0.67 0.952292
Target:  5'- --cGCu--GCCCaGCGCGAACaC-GUCCa -3'
miRNA:   3'- gcaCGuauUGGG-CGCGCUUG-GaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 47778 0.67 0.952292
Target:  5'- gCGUGUcaaAUGGCCUGCGgGGAg-UGUCCu -3'
miRNA:   3'- -GCACG---UAUUGGGCGCgCUUggACAGG- -5'
24546 3' -53.8 NC_005264.1 + 134683 0.67 0.952292
Target:  5'- uCG-GCAcgacuuGCCUGCGCGAuguccCCUGcCCg -3'
miRNA:   3'- -GCaCGUau----UGGGCGCGCUu----GGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 78016 0.67 0.955067
Target:  5'- gCGUGCAUGACggcgaggcuucgcuCCGUGCGccaugcCCUG-CCu -3'
miRNA:   3'- -GCACGUAUUG--------------GGCGCGCuu----GGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 75219 0.67 0.956222
Target:  5'- -cUGCAUcGGCCCuGCGCGGcgGCC-GUCUu -3'
miRNA:   3'- gcACGUA-UUGGG-CGCGCU--UGGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 52128 0.67 0.959925
Target:  5'- aGUGCGUGuUCCaGCGCGAuacaauUCaGUCCg -3'
miRNA:   3'- gCACGUAUuGGG-CGCGCUu-----GGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 89513 0.66 0.96204
Target:  5'- uCGUGCAgagagcggcaggcGGCCUauugauugGCGCGGGCagUGUCCg -3'
miRNA:   3'- -GCACGUa------------UUGGG--------CGCGCUUGg-ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 54993 0.66 0.963406
Target:  5'- -uUGCGUGgaacACCCG-GCGAcuaugacgGCCUGcCCg -3'
miRNA:   3'- gcACGUAU----UGGGCgCGCU--------UGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 76000 0.66 0.966671
Target:  5'- --cGCAUAAUCgGCGUGAGCacguUCCa -3'
miRNA:   3'- gcaCGUAUUGGgCGCGCUUGgac-AGG- -5'
24546 3' -53.8 NC_005264.1 + 79648 0.66 0.969725
Target:  5'- --cGCAUAGuuCGCGCcGcGCCUG-CCg -3'
miRNA:   3'- gcaCGUAUUggGCGCG-CuUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 22699 0.66 0.969725
Target:  5'- -aUGCAUuACCUGCGgGGGCCcagagaUGcCCg -3'
miRNA:   3'- gcACGUAuUGGGCGCgCUUGG------ACaGG- -5'
24546 3' -53.8 NC_005264.1 + 66134 0.66 0.969725
Target:  5'- --gGCAUGGCggCGCGCGAGggcgcggcaaauCCUGUCa -3'
miRNA:   3'- gcaCGUAUUGg-GCGCGCUU------------GGACAGg -5'
24546 3' -53.8 NC_005264.1 + 150732 0.66 0.969725
Target:  5'- aCG-GCccucCCCGCcCGAGCCUGgagCCg -3'
miRNA:   3'- -GCaCGuauuGGGCGcGCUUGGACa--GG- -5'
24546 3' -53.8 NC_005264.1 + 131321 0.66 0.969725
Target:  5'- aCG-GCccucCCCGCcCGAGCCUGgagCCg -3'
miRNA:   3'- -GCaCGuauuGGGCGcGCUUGGACa--GG- -5'
24546 3' -53.8 NC_005264.1 + 82201 0.66 0.969725
Target:  5'- cCGUGuCGUGG-CCGCGCGu-CCaucGUCCu -3'
miRNA:   3'- -GCAC-GUAUUgGGCGCGCuuGGa--CAGG- -5'
24546 3' -53.8 NC_005264.1 + 146101 0.66 0.972573
Target:  5'- --cGCGcUGACCCGcCGCcGGAgCUGuUCCa -3'
miRNA:   3'- gcaCGU-AUUGGGC-GCG-CUUgGAC-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.