miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24546 5' -53.9 NC_005264.1 + 90987 0.66 0.958432
Target:  5'- -cGAACAGgGUCuacAGCGGGaaacaAGGcgGCa -3'
miRNA:   3'- uuCUUGUCaCAG---UCGCCCg----UCCaaCG- -5'
24546 5' -53.9 NC_005264.1 + 35737 0.66 0.958432
Target:  5'- cAGGAUGGUGcCGGCGaGGaguaccGGUUGCc -3'
miRNA:   3'- uUCUUGUCACaGUCGC-CCgu----CCAACG- -5'
24546 5' -53.9 NC_005264.1 + 79848 0.66 0.94141
Target:  5'- gGAGAAUu-UGUCAGC-GGCAGGcgcgGCg -3'
miRNA:   3'- -UUCUUGucACAGUCGcCCGUCCaa--CG- -5'
24546 5' -53.9 NC_005264.1 + 98664 0.67 0.926044
Target:  5'- -cGAACGGUGUCGGCGcuaGCuuagAGGgaGCc -3'
miRNA:   3'- uuCUUGUCACAGUCGCc--CG----UCCaaCG- -5'
24546 5' -53.9 NC_005264.1 + 45794 0.67 0.92042
Target:  5'- ---cGCGGccUCuGCGGGCGGGUgaUGCa -3'
miRNA:   3'- uucuUGUCacAGuCGCCCGUCCA--ACG- -5'
24546 5' -53.9 NC_005264.1 + 135146 0.67 0.908417
Target:  5'- uGAGAGCgAGcGUCGGCGaGGCAGag-GCc -3'
miRNA:   3'- -UUCUUG-UCaCAGUCGC-CCGUCcaaCG- -5'
24546 5' -53.9 NC_005264.1 + 157032 0.68 0.888561
Target:  5'- cAAGGGgAGUcGUCGGCcccgacGGGCGGGgagGCu -3'
miRNA:   3'- -UUCUUgUCA-CAGUCG------CCCGUCCaa-CG- -5'
24546 5' -53.9 NC_005264.1 + 125021 0.68 0.888561
Target:  5'- cAAGGGgAGUcGUCGGCcccgacGGGCGGGgagGCu -3'
miRNA:   3'- -UUCUUgUCA-CAGUCG------CCCGUCCaa-CG- -5'
24546 5' -53.9 NC_005264.1 + 88441 0.68 0.888561
Target:  5'- -cGGACAGg--CGGCGGGCAaacaguaucuGGUcUGCg -3'
miRNA:   3'- uuCUUGUCacaGUCGCCCGU----------CCA-ACG- -5'
24546 5' -53.9 NC_005264.1 + 13791 0.68 0.881461
Target:  5'- cAAGAuaACGGUGaaccCGGGCAGGggGCu -3'
miRNA:   3'- -UUCU--UGUCACagucGCCCGUCCaaCG- -5'
24546 5' -53.9 NC_005264.1 + 3614 0.68 0.881461
Target:  5'- -uGGACGGUGggcgCuGUGGGCGGGgUGg -3'
miRNA:   3'- uuCUUGUCACa---GuCGCCCGUCCaACg -5'
24546 5' -53.9 NC_005264.1 + 4011 0.68 0.874128
Target:  5'- cAGGAGCAG-GUCuccGCGcGCAGGgaGCa -3'
miRNA:   3'- -UUCUUGUCaCAGu--CGCcCGUCCaaCG- -5'
24546 5' -53.9 NC_005264.1 + 64681 0.68 0.874128
Target:  5'- -uGGGCc-UGcCGGCGGGCAGGccgUGCu -3'
miRNA:   3'- uuCUUGucACaGUCGCCCGUCCa--ACG- -5'
24546 5' -53.9 NC_005264.1 + 146587 0.69 0.866567
Target:  5'- --uGACAGUGUU-GCGGGguGGgcGUa -3'
miRNA:   3'- uucUUGUCACAGuCGCCCguCCaaCG- -5'
24546 5' -53.9 NC_005264.1 + 14051 0.7 0.816777
Target:  5'- uAGAGCAG-GUC-GUGGGUgauGGGUUGUc -3'
miRNA:   3'- uUCUUGUCaCAGuCGCCCG---UCCAACG- -5'
24546 5' -53.9 NC_005264.1 + 56262 0.7 0.789389
Target:  5'- cAAGAcGCGGcGUCAGCGGGCG---UGCa -3'
miRNA:   3'- -UUCU-UGUCaCAGUCGCCCGUccaACG- -5'
24546 5' -53.9 NC_005264.1 + 56722 0.71 0.740892
Target:  5'- gGAGAgcgACAGcUG-CGGCGGGCAGG--GCg -3'
miRNA:   3'- -UUCU---UGUC-ACaGUCGCCCGUCCaaCG- -5'
24546 5' -53.9 NC_005264.1 + 88103 0.71 0.720724
Target:  5'- cGGGcACAGcGUCGGCcGGCGcGGUUGCg -3'
miRNA:   3'- -UUCuUGUCaCAGUCGcCCGU-CCAACG- -5'
24546 5' -53.9 NC_005264.1 + 87606 0.72 0.669074
Target:  5'- -cGGGCAGUGUaCGGCGGGCcgugauucaGGGUgaUGUu -3'
miRNA:   3'- uuCUUGUCACA-GUCGCCCG---------UCCA--ACG- -5'
24546 5' -53.9 NC_005264.1 + 90884 0.74 0.595673
Target:  5'- cGGAuaccacACGGUGUCAG-GGGCAGuUUGCa -3'
miRNA:   3'- uUCU------UGUCACAGUCgCCCGUCcAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.