miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24547 5' -64.3 NC_005264.1 + 156562 0.66 0.586709
Target:  5'- cUCGGCGGCgCGGCgaaCgucGGGGUgCGc -3'
miRNA:   3'- cGGCCGCCGaGCCGa--Ga--CCCCAgGCu -5'
24547 5' -64.3 NC_005264.1 + 125491 0.66 0.586709
Target:  5'- cUCGGCGGCgCGGCgaaCgucGGGGUgCGc -3'
miRNA:   3'- cGGCCGCCGaGCCGa--Ga--CCCCAgGCu -5'
24547 5' -64.3 NC_005264.1 + 123117 0.67 0.539606
Target:  5'- aCgGGCGGCgucgCGGCaCgacGGGG-CCGAg -3'
miRNA:   3'- cGgCCGCCGa---GCCGaGa--CCCCaGGCU- -5'
24547 5' -64.3 NC_005264.1 + 158936 0.67 0.539606
Target:  5'- aCgGGCGGCgucgCGGCaCgacGGGG-CCGAg -3'
miRNA:   3'- cGgCCGCCGa---GCCGaGa--CCCCaGGCU- -5'
24547 5' -64.3 NC_005264.1 + 34382 0.67 0.52479
Target:  5'- uGCCGacgccaaagacgggcGCGGCUCGaGCUCaGGGaaugagCCGAg -3'
miRNA:   3'- -CGGC---------------CGCCGAGC-CGAGaCCCca----GGCU- -5'
24547 5' -64.3 NC_005264.1 + 57900 0.68 0.476044
Target:  5'- gGCuCGGC-GCUUGGCacggCUGGGGguUCCGc -3'
miRNA:   3'- -CG-GCCGcCGAGCCGa---GACCCC--AGGCu -5'
24547 5' -64.3 NC_005264.1 + 131518 0.69 0.424665
Target:  5'- gGUCaGGCGGCUCcaGGCUCgggcGGGGagggCCGu -3'
miRNA:   3'- -CGG-CCGCCGAG--CCGAGa---CCCCa---GGCu -5'
24547 5' -64.3 NC_005264.1 + 150535 0.69 0.424665
Target:  5'- gGUCaGGCGGCUCcaGGCUCgggcGGGGagggCCGu -3'
miRNA:   3'- -CGG-CCGCCGAG--CCGAGa---CCCCa---GGCu -5'
24547 5' -64.3 NC_005264.1 + 35177 0.69 0.408287
Target:  5'- gGCCGGCGGUcuagaaccCGGCgcgcgaaUGGGGUCUc- -3'
miRNA:   3'- -CGGCCGCCGa-------GCCGag-----ACCCCAGGcu -5'
24547 5' -64.3 NC_005264.1 + 125432 0.69 0.376744
Target:  5'- -gCGGCGGCcgCGGCgg-GGGGUCaaaGGa -3'
miRNA:   3'- cgGCCGCCGa-GCCGagaCCCCAGg--CU- -5'
24547 5' -64.3 NC_005264.1 + 156621 0.69 0.376744
Target:  5'- -gCGGCGGCcgCGGCgg-GGGGUCaaaGGa -3'
miRNA:   3'- cgGCCGCCGa-GCCGagaCCCCAGg--CU- -5'
24547 5' -64.3 NC_005264.1 + 46734 0.7 0.369119
Target:  5'- cGCgGGCGGCUaCGGCUgUGGccUUCGAc -3'
miRNA:   3'- -CGgCCGCCGA-GCCGAgACCccAGGCU- -5'
24547 5' -64.3 NC_005264.1 + 18415 0.7 0.364594
Target:  5'- gGCCGGCGcaggcgcgcccucucGCUCGGCgc-GGGGU-CGAa -3'
miRNA:   3'- -CGGCCGC---------------CGAGCCGagaCCCCAgGCU- -5'
24547 5' -64.3 NC_005264.1 + 109926 0.7 0.3616
Target:  5'- aGCUGGUGgacaaggcGCUCGGCgagGGGG-CCGAg -3'
miRNA:   3'- -CGGCCGC--------CGAGCCGagaCCCCaGGCU- -5'
24547 5' -64.3 NC_005264.1 + 150961 0.7 0.351254
Target:  5'- gGCCcucGCGGCUCGGCUCUGagcucgcgaguggcGGcgacgggccgcguGUCCGAu -3'
miRNA:   3'- -CGGc--CGCCGAGCCGAGAC--------------CC-------------CAGGCU- -5'
24547 5' -64.3 NC_005264.1 + 131091 0.7 0.343993
Target:  5'- gGCCucGCGGCUCGGCUCUGagcucgcgaguggcGGcgacgggccgcguGUCCGAu -3'
miRNA:   3'- -CGGc-CGCCGAGCCGAGAC--------------CC-------------CAGGCU- -5'
24547 5' -64.3 NC_005264.1 + 55828 0.71 0.303377
Target:  5'- aGCCGGUGGCggcgCGGCUgaCUGGgccucagggcuucuGGUCCu- -3'
miRNA:   3'- -CGGCCGCCGa---GCCGA--GACC--------------CCAGGcu -5'
24547 5' -64.3 NC_005264.1 + 126687 0.71 0.29881
Target:  5'- uGCCGGCucggagGGCUCGGcCUCcaUGGGcucGUCCGu -3'
miRNA:   3'- -CGGCCG------CCGAGCC-GAG--ACCC---CAGGCu -5'
24547 5' -64.3 NC_005264.1 + 155366 0.71 0.29881
Target:  5'- uGCCGGCucggagGGCUCGGcCUCcaUGGGcucGUCCGu -3'
miRNA:   3'- -CGGCCG------CCGAGCC-GAG--ACCC---CAGGCu -5'
24547 5' -64.3 NC_005264.1 + 13783 0.72 0.250377
Target:  5'- cGCUGGcCGGUgUGGCgCUGGGG-CCGAa -3'
miRNA:   3'- -CGGCC-GCCGaGCCGaGACCCCaGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.