miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24548 3' -51.4 NC_005264.1 + 53687 0.66 0.990694
Target:  5'- gCGCGaUCuAGAGUAUAGAUaUUCGCGa -3'
miRNA:   3'- -GUGCaAGuUCUCGUGUCUAgGAGCGU- -5'
24548 3' -51.4 NC_005264.1 + 46392 0.66 0.986301
Target:  5'- aCGCGggUCGucAGGGC-CAGGUCCgcCGCGa -3'
miRNA:   3'- -GUGCa-AGU--UCUCGuGUCUAGGa-GCGU- -5'
24548 3' -51.4 NC_005264.1 + 141390 0.66 0.986131
Target:  5'- gGCGUaguuguuUCAGGGGUA-AGGUCCUCGgGg -3'
miRNA:   3'- gUGCA-------AGUUCUCGUgUCUAGGAGCgU- -5'
24548 3' -51.4 NC_005264.1 + 75380 0.67 0.984529
Target:  5'- cCGCGU---GGGGCGCGGGaCCUgGCGg -3'
miRNA:   3'- -GUGCAaguUCUCGUGUCUaGGAgCGU- -5'
24548 3' -51.4 NC_005264.1 + 142254 0.67 0.982588
Target:  5'- aACG-UCAuGAGCGCAGuAUCgUUGCGc -3'
miRNA:   3'- gUGCaAGUuCUCGUGUC-UAGgAGCGU- -5'
24548 3' -51.4 NC_005264.1 + 18457 0.68 0.970045
Target:  5'- gACGUgUAGGAGCACGuc-CCUCGCc -3'
miRNA:   3'- gUGCAaGUUCUCGUGUcuaGGAGCGu -5'
24548 3' -51.4 NC_005264.1 + 45302 0.68 0.963555
Target:  5'- aGCGUgcc-GAGCACAGAgaagUCCgUCGCGc -3'
miRNA:   3'- gUGCAaguuCUCGUGUCU----AGG-AGCGU- -5'
24548 3' -51.4 NC_005264.1 + 118121 0.69 0.952077
Target:  5'- uCugGggCGGGAGgAgAGAUCCggCGCAa -3'
miRNA:   3'- -GugCaaGUUCUCgUgUCUAGGa-GCGU- -5'
24548 3' -51.4 NC_005264.1 + 59128 0.69 0.947766
Target:  5'- gACGccgUCAAcuuGCGCAGGcUCCUCGCGu -3'
miRNA:   3'- gUGCa--AGUUcu-CGUGUCU-AGGAGCGU- -5'
24548 3' -51.4 NC_005264.1 + 114064 0.69 0.947766
Target:  5'- uGCGcucCAAGcaguaGGCGCAGAacucuUCCUCGCAa -3'
miRNA:   3'- gUGCaa-GUUC-----UCGUGUCU-----AGGAGCGU- -5'
24548 3' -51.4 NC_005264.1 + 27359 0.69 0.947321
Target:  5'- uUACGUgauggCuaauGGAGCACGuauugauGAUCCUCGCc -3'
miRNA:   3'- -GUGCAa----Gu---UCUCGUGU-------CUAGGAGCGu -5'
24548 3' -51.4 NC_005264.1 + 122523 0.69 0.938395
Target:  5'- aCGCGgcgGGGGGCAgGgGAUCCUCGCc -3'
miRNA:   3'- -GUGCaagUUCUCGUgU-CUAGGAGCGu -5'
24548 3' -51.4 NC_005264.1 + 159530 0.69 0.938395
Target:  5'- aCGCGgcgGGGGGCAgGgGAUCCUCGCc -3'
miRNA:   3'- -GUGCaagUUCUCGUgU-CUAGGAGCGu -5'
24548 3' -51.4 NC_005264.1 + 55772 0.7 0.928009
Target:  5'- aGCGUUCAcGGGCGCAuGUCCgcuGCAg -3'
miRNA:   3'- gUGCAAGUuCUCGUGUcUAGGag-CGU- -5'
24548 3' -51.4 NC_005264.1 + 3998 0.7 0.910516
Target:  5'- cCGCGcgCAgGGAGCACc--UCCUCGCAa -3'
miRNA:   3'- -GUGCaaGU-UCUCGUGucuAGGAGCGU- -5'
24548 3' -51.4 NC_005264.1 + 69162 0.71 0.89759
Target:  5'- gACGUgagcUCGGGGGCAgAGuUCCUCGUu -3'
miRNA:   3'- gUGCA----AGUUCUCGUgUCuAGGAGCGu -5'
24548 3' -51.4 NC_005264.1 + 129569 0.71 0.883678
Target:  5'- cCGCccUCAGGGGCGCGGAUCg-CGCGu -3'
miRNA:   3'- -GUGcaAGUUCUCGUGUCUAGgaGCGU- -5'
24548 3' -51.4 NC_005264.1 + 152484 0.71 0.883678
Target:  5'- cCGCccUCAGGGGCGCGGAUCg-CGCGu -3'
miRNA:   3'- -GUGcaAGUUCUCGUGUCUAGgaGCGU- -5'
24548 3' -51.4 NC_005264.1 + 30459 0.72 0.844828
Target:  5'- cCACGUUCAccAGUACAGAagUCUCGCu -3'
miRNA:   3'- -GUGCAAGUucUCGUGUCUa-GGAGCGu -5'
24548 3' -51.4 NC_005264.1 + 104528 0.76 0.649433
Target:  5'- uGCGcgCAAGAGCGCGGugcGUCCUCGgAu -3'
miRNA:   3'- gUGCaaGUUCUCGUGUC---UAGGAGCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.