miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24548 5' -59.7 NC_005264.1 + 61454 0.72 0.403672
Target:  5'- --gGCGCCgagUUGCuCGaGCGCCGUUCg -3'
miRNA:   3'- acaCGCGGaa-GACGcGC-CGCGGCAAG- -5'
24548 5' -59.7 NC_005264.1 + 19908 0.66 0.729083
Target:  5'- --gGUGCUUUgUG-GUGGCGCCGUg- -3'
miRNA:   3'- acaCGCGGAAgACgCGCCGCGGCAag -5'
24548 5' -59.7 NC_005264.1 + 112976 0.66 0.738684
Target:  5'- --cGCGUauacgCUGCGCGGCGUCa--- -3'
miRNA:   3'- acaCGCGgaa--GACGCGCCGCGGcaag -5'
24548 5' -59.7 NC_005264.1 + 67378 0.66 0.766919
Target:  5'- --cGCGCUcgCUGCGCccgccGGCGCgGUa- -3'
miRNA:   3'- acaCGCGGaaGACGCG-----CCGCGgCAag -5'
24548 5' -59.7 NC_005264.1 + 26070 0.7 0.502271
Target:  5'- gUGUGUGCCUa--GCcCGGCGCUGUUUu -3'
miRNA:   3'- -ACACGCGGAagaCGcGCCGCGGCAAG- -5'
24548 5' -59.7 NC_005264.1 + 22732 0.7 0.502271
Target:  5'- cGUGUGUCUgCUGCcCGGUGCUGggCg -3'
miRNA:   3'- aCACGCGGAaGACGcGCCGCGGCaaG- -5'
24548 5' -59.7 NC_005264.1 + 40662 0.69 0.550477
Target:  5'- --cGCgaGCCUUaCUaCGCuGGCGCCGUUCg -3'
miRNA:   3'- acaCG--CGGAA-GAcGCG-CCGCGGCAAG- -5'
24548 5' -59.7 NC_005264.1 + 4768 1.1 0.001122
Target:  5'- aUGUGCGCCUUCUGCGCGGCGCCGUUCg -3'
miRNA:   3'- -ACACGCGGAAGACGCGCCGCGGCAAG- -5'
24548 5' -59.7 NC_005264.1 + 46454 0.74 0.304222
Target:  5'- -cUGCGgCUUUUGCGCGGCGCUcUUUg -3'
miRNA:   3'- acACGCgGAAGACGCGCCGCGGcAAG- -5'
24548 5' -59.7 NC_005264.1 + 158235 0.67 0.7194
Target:  5'- --cGCGCCUacgCcGcCGCGGCGCUGg-- -3'
miRNA:   3'- acaCGCGGAa--GaC-GCGCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 34323 0.68 0.630047
Target:  5'- --aGCGCCUUCgagGCgGCGGUgauguGCCuGUUCc -3'
miRNA:   3'- acaCGCGGAAGa--CG-CGCCG-----CGG-CAAG- -5'
24548 5' -59.7 NC_005264.1 + 159669 0.68 0.610006
Target:  5'- --cGCGCCgUCgcGCGCGGaggguCGCCGUUUc -3'
miRNA:   3'- acaCGCGGaAGa-CGCGCC-----GCGGCAAG- -5'
24548 5' -59.7 NC_005264.1 + 42731 0.71 0.456003
Target:  5'- -cUGCGCCccacUUCUGCGCGGCacCCGg-- -3'
miRNA:   3'- acACGCGG----AAGACGCGCCGc-GGCaag -5'
24548 5' -59.7 NC_005264.1 + 25526 0.67 0.69983
Target:  5'- --aGCauGUCUUCUGCGaugGGUGCCGUa- -3'
miRNA:   3'- acaCG--CGGAAGACGCg--CCGCGGCAag -5'
24548 5' -59.7 NC_005264.1 + 17371 0.71 0.474246
Target:  5'- cGgcgGCGCggUCUGUGUacGuGCGCCGUUCg -3'
miRNA:   3'- aCa--CGCGgaAGACGCG--C-CGCGGCAAG- -5'
24548 5' -59.7 NC_005264.1 + 75720 0.69 0.600006
Target:  5'- gGUGCGCCcc--GCG-GGCGCCGg-- -3'
miRNA:   3'- aCACGCGGaagaCGCgCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 152306 0.67 0.709647
Target:  5'- --cGCGCCc-CUGaggGCGGCGCCGc-- -3'
miRNA:   3'- acaCGCGGaaGACg--CGCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 75214 0.66 0.729083
Target:  5'- --cGCGgCUgcaucggccCUGCGCGGCgGCCGUc- -3'
miRNA:   3'- acaCGCgGAa--------GACGCGCCG-CGGCAag -5'
24548 5' -59.7 NC_005264.1 + 38040 0.71 0.483503
Target:  5'- aGUGCGCCgcuugUCaGUGgaaGGCGCCGcUCu -3'
miRNA:   3'- aCACGCGGa----AGaCGCg--CCGCGGCaAG- -5'
24548 5' -59.7 NC_005264.1 + 26118 0.7 0.511775
Target:  5'- --cGCGCggcUCgugGCGCGGCGCCGa-- -3'
miRNA:   3'- acaCGCGga-AGa--CGCGCCGCGGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.