Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24548 | 5' | -59.7 | NC_005264.1 | + | 25526 | 0.67 | 0.69983 |
Target: 5'- --aGCauGUCUUCUGCGaugGGUGCCGUa- -3' miRNA: 3'- acaCG--CGGAAGACGCg--CCGCGGCAag -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 77962 | 0.67 | 0.680041 |
Target: 5'- gGUGCGUC-UCUGCgGCcGCGUCGUc- -3' miRNA: 3'- aCACGCGGaAGACG-CGcCGCGGCAag -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 96715 | 0.67 | 0.670085 |
Target: 5'- -cUGCacuCCUgUUGCGCGGCGUCGUg- -3' miRNA: 3'- acACGc--GGAaGACGCGCCGCGGCAag -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 13300 | 0.68 | 0.630047 |
Target: 5'- --aGCGCUUgCUGUaGUGGCGCCGg-- -3' miRNA: 3'- acaCGCGGAaGACG-CGCCGCGGCaag -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 34323 | 0.68 | 0.630047 |
Target: 5'- --aGCGCCUUCgagGCgGCGGUgauguGCCuGUUCc -3' miRNA: 3'- acaCGCGGAAGa--CG-CGCCG-----CGG-CAAG- -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 159669 | 0.68 | 0.610006 |
Target: 5'- --cGCGCCgUCgcGCGCGGaggguCGCCGUUUc -3' miRNA: 3'- acaCGCGGaAGa-CGCGCC-----GCGGCAAG- -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 42102 | 0.69 | 0.600006 |
Target: 5'- --aGCgGCUUUCUGCGCGGU--CGUUCu -3' miRNA: 3'- acaCG-CGGAAGACGCGCCGcgGCAAG- -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 75720 | 0.69 | 0.600006 |
Target: 5'- gGUGCGCCcc--GCG-GGCGCCGg-- -3' miRNA: 3'- aCACGCGGaagaCGCgCCGCGGCaag -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 32051 | 0.69 | 0.580081 |
Target: 5'- cGUGCGCCgaCcGCGaGGCGCUGg-- -3' miRNA: 3'- aCACGCGGaaGaCGCgCCGCGGCaag -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 142750 | 0.69 | 0.570169 |
Target: 5'- gGUGCGagaagauaCUugUCUGCGCGGUGUacgGUUCu -3' miRNA: 3'- aCACGCg-------GA--AGACGCGCCGCGg--CAAG- -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 18243 | 0.69 | 0.570169 |
Target: 5'- --cGCGCCcuggCU-CGCGGCGCCGccgcUUCg -3' miRNA: 3'- acaCGCGGaa--GAcGCGCCGCGGC----AAG- -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 26852 | 0.69 | 0.560299 |
Target: 5'- ---aCGCCUuuuuugucguUCUaGCGCGGCGCCGg-- -3' miRNA: 3'- acacGCGGA----------AGA-CGCGCCGCGGCaag -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 40662 | 0.69 | 0.550477 |
Target: 5'- --cGCgaGCCUUaCUaCGCuGGCGCCGUUCg -3' miRNA: 3'- acaCG--CGGAA-GAcGCG-CCGCGGCAAG- -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 26118 | 0.7 | 0.511775 |
Target: 5'- --cGCGCggcUCgugGCGCGGCGCCGa-- -3' miRNA: 3'- acaCGCGga-AGa--CGCGCCGCGGCaag -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 22732 | 0.7 | 0.502271 |
Target: 5'- cGUGUGUCUgCUGCcCGGUGCUGggCg -3' miRNA: 3'- aCACGCGGAaGACGcGCCGCGGCaaG- -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 26070 | 0.7 | 0.502271 |
Target: 5'- gUGUGUGCCUa--GCcCGGCGCUGUUUu -3' miRNA: 3'- -ACACGCGGAagaCGcGCCGCGGCAAG- -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 38040 | 0.71 | 0.483503 |
Target: 5'- aGUGCGCCgcuugUCaGUGgaaGGCGCCGcUCu -3' miRNA: 3'- aCACGCGGa----AGaCGCg--CCGCGGCaAG- -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 17371 | 0.71 | 0.474246 |
Target: 5'- cGgcgGCGCggUCUGUGUacGuGCGCCGUUCg -3' miRNA: 3'- aCa--CGCGgaAGACGCG--C-CGCGGCAAG- -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 58938 | 0.71 | 0.474246 |
Target: 5'- cGUGCGCC-UCUGauagcgcaGCGGCgGCCGc-- -3' miRNA: 3'- aCACGCGGaAGACg-------CGCCG-CGGCaag -5' |
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24548 | 5' | -59.7 | NC_005264.1 | + | 87628 | 0.71 | 0.465078 |
Target: 5'- --cGCGCCaccgUCUGCGCGGcCGCgGg-- -3' miRNA: 3'- acaCGCGGa---AGACGCGCC-GCGgCaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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