miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24549 3' -53.6 NC_005264.1 + 37370 0.66 0.978925
Target:  5'- gGCGCCGUAaaaugCGUCUGcGGCCcag-CGu -3'
miRNA:   3'- -CGCGGCGUa----GCAGGCuUCGGauaaGC- -5'
24549 3' -53.6 NC_005264.1 + 86747 0.66 0.978925
Target:  5'- cGCGCUGUucgCGcCCGuaGAGCCg--UCGa -3'
miRNA:   3'- -CGCGGCGua-GCaGGC--UUCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 33574 0.66 0.978925
Target:  5'- uGCG-CGCGagGUagCGGAGCCaUGUUCGg -3'
miRNA:   3'- -CGCgGCGUagCAg-GCUUCGG-AUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 95625 0.66 0.978925
Target:  5'- uGCGCCGCAUC-UCCGGgcaaccgcagAGCaaacugCGg -3'
miRNA:   3'- -CGCGGCGUAGcAGGCU----------UCGgauaa-GC- -5'
24549 3' -53.6 NC_005264.1 + 98753 0.66 0.978925
Target:  5'- gGCGCCGUucAUCuUgCGgcGCaCUGUUCGc -3'
miRNA:   3'- -CGCGGCG--UAGcAgGCuuCG-GAUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 100348 0.66 0.978925
Target:  5'- cGCGCCuGgAUCGUCCGAugaaAGUCa----- -3'
miRNA:   3'- -CGCGG-CgUAGCAGGCU----UCGGauaagc -5'
24549 3' -53.6 NC_005264.1 + 136681 0.66 0.978697
Target:  5'- aGUGCCGCGaaaguccUCG-CCGcGGCCUGg--- -3'
miRNA:   3'- -CGCGGCGU-------AGCaGGCuUCGGAUaagc -5'
24549 3' -53.6 NC_005264.1 + 64176 0.66 0.977529
Target:  5'- aGCGCCGCcagcacuggGUCGagcaggaaccccacuUCCGAcucGGCCUug-CGg -3'
miRNA:   3'- -CGCGGCG---------UAGC---------------AGGCU---UCGGAuaaGC- -5'
24549 3' -53.6 NC_005264.1 + 12147 0.66 0.976562
Target:  5'- gGCGCUGCccGUUG-CUGggGUCUcgUCu -3'
miRNA:   3'- -CGCGGCG--UAGCaGGCuuCGGAuaAGc -5'
24549 3' -53.6 NC_005264.1 + 65298 0.66 0.976562
Target:  5'- gGCGUCGCGUUcaCCGgAGGCCggcacgacccggUGUUCGu -3'
miRNA:   3'- -CGCGGCGUAGcaGGC-UUCGG------------AUAAGC- -5'
24549 3' -53.6 NC_005264.1 + 81200 0.66 0.976315
Target:  5'- gGCGCCGC-UgGUUCGAccaccaaggcggaGGCCacgUCGg -3'
miRNA:   3'- -CGCGGCGuAgCAGGCU-------------UCGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 133612 0.66 0.976315
Target:  5'- cCGCCGCAUCGgagGAGGUcaugucaCUGUUCa -3'
miRNA:   3'- cGCGGCGUAGCaggCUUCG-------GAUAAGc -5'
24549 3' -53.6 NC_005264.1 + 35158 0.66 0.97401
Target:  5'- -gGCCGCGgugUGUCUGGugGGCaagGUUCGg -3'
miRNA:   3'- cgCGGCGUa--GCAGGCU--UCGga-UAAGC- -5'
24549 3' -53.6 NC_005264.1 + 86084 0.66 0.97401
Target:  5'- aGCGCCuGCGUUa--CGAGGCCU-UUCa -3'
miRNA:   3'- -CGCGG-CGUAGcagGCUUCGGAuAAGc -5'
24549 3' -53.6 NC_005264.1 + 154638 0.66 0.97401
Target:  5'- cGCGgCGCGUUGaagcugCCGGAGCUguuguugUCGa -3'
miRNA:   3'- -CGCgGCGUAGCa-----GGCUUCGGaua----AGC- -5'
24549 3' -53.6 NC_005264.1 + 95455 0.66 0.97401
Target:  5'- uGCGgCGCAUCGUagaCGAcGCCgccgacUCGu -3'
miRNA:   3'- -CGCgGCGUAGCAg--GCUuCGGaua---AGC- -5'
24549 3' -53.6 NC_005264.1 + 62301 0.66 0.97401
Target:  5'- cCGCgaGCGUCGUCCGGAcuagacccGCCcugUCGu -3'
miRNA:   3'- cGCGg-CGUAGCAGGCUU--------CGGauaAGC- -5'
24549 3' -53.6 NC_005264.1 + 60280 0.66 0.97401
Target:  5'- aGCGCCGCGUCGggcaUGAcGUacucggAUUCGg -3'
miRNA:   3'- -CGCGGCGUAGCag--GCUuCGga----UAAGC- -5'
24549 3' -53.6 NC_005264.1 + 127415 0.66 0.97401
Target:  5'- cGCGgCGCGUUGaagcugCCGGAGCUguuguugUCGa -3'
miRNA:   3'- -CGCgGCGUAGCa-----GGCUUCGGaua----AGC- -5'
24549 3' -53.6 NC_005264.1 + 98842 0.66 0.971262
Target:  5'- aGCGCCGaCAccguUCGUCUGAcGuCCgggUCGa -3'
miRNA:   3'- -CGCGGC-GU----AGCAGGCUuC-GGauaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.